Motif IL_32396.1 Version IL_32396.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6LTU_001 | 6LTU | 0.7049 | 2 | Multiple bulged bases | B | RNA (56-mer) | C | 11 | U | 12 | * | A | 16 | G | 19 | cWW | cWW |
| 2 | IL_4WF9_098 | 4WF9 | 0.6083 | 1 | Single bulged A | X | LSU rRNA | C | 2628 | G | 2630 | * | C | 2618 | G | 2619 | cWW | cWW |
| 3 | IL_6JXM_001 | 6JXM | 0.4533 | 2 | Multiple bulged bases | B | tRNA | G | 53 | U | 56 | * | A | 34 | C | 35 | cWW | cWW |
| 4 | IL_6CZR_134 | 6CZR | 0.1214 | 5 | 1a | SSU rRNA | C | 553 | G | 559 | * | C | 858 | G | 859 | cWW | cWW | |
| 5 | IL_4LFB_022 | 4LFB | 0.0000 | 5 | A | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
| 6 | IL_5J7L_026 | 5J7L | 0.0691 | 5 | AA | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
| 7 | IL_4V88_416 | 4V88 | 0.1289 | 5 | A6 | SSU rRNA | G | 616 | A | 622 | * | U | 1104 | C | 1105 | cWW | cWW | |
| 8 | IL_1NBS_009 | 1NBS | 0.2174 | 2 | Major groove intercalation | B | RNase P class B | U | 228 | A | 231 | * | U | 181 | G | 182 | cWW | cWW |
| 9 | IL_1U9S_003 | 1U9S | 0.2569 | 2 | Major groove intercalation | A | RIBONUCLEASE P | C | 224 | A | 227 | * | U | 116 | G | 117 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAAG*CG | 3 |
| CU*AUUG | 1 |
| CAG*CG | 1 |
| GAUU*AC | 1 |
| GUUAAAA*UC | 1 |
| UAAA*UG | 1 |
| CAAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAA* | 3 |
| AA* | 2 |
| *UU | 1 |
| A* | 1 |
| AU* | 1 |
| UUAAA* | 1 |
- Annotations
-
- (4)
- Major groove intercalation (2)
- Multiple bulged bases (2)
- Single bulged A (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.35 | Max 0.74
Coloring options: