#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-72-83-64-5
1 IL_1U6B_0041U6B0.55571B197-MERC96A98G99C100*G119A120A121G122cWWcWWcWW
2 IL_6DTD_0016DTD0.40020Tandem non-canonical cWW pairsCRNA (37-MER)A31A32A33C34*G5C6A7U8cWWcWwncWBcWW
3 IL_3CJZ_0013CJZ0.37690B+ARNA (13-mer)G18M2G19A20C21*G5M2G6A7C8cWWcWWcWWcWW
4 IL_5LQO_0025LQO0.44360Tandem non-canonical cWW pairsB+ARNA (10-mer)G4G5A6C7*G4G5A6C7cWWcWWcWWcWW
5 IL_8C3A_4398C3A0.50800Tandem non-canonical cWW pairs (H)CM SSU rRNAA909G910A911C912*G870U871A872U873cWWcWW
6 IL_4V88_4324V880.50030Tandem non-canonical cWW pairsA6 SSU rRNAG885U886A887U888*A924G925A926C927cWWcWW
7 IL_4V88_4304V880.39200Tandem non-canonical cWW pairsA6 SSU rRNAG871G872U873C874*G953G954A955C956cWW
8 IL_8C3A_4378C3A0.41120Tandem non-canonical cWW pairs (H)CM SSU rRNAG856G857U858C859*G938G939A940C941cWWcWW
9 IL_5TBW_5045TBW0.389501 LSU rRNAA3163C3164A3165C3166*G3284C3285G3286U3287ncWWncWWncWWacWW
10 IL_1L9A_0051L9A0.32970Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG156A157C158C159*G138A139C140C141cWWncWWancWWcWW
11 IL_4K27_0014K270.29380Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC4C5U6G7*C49C50U51G52cWWcWWcWW
12 IL_413D_001413D0.04390Tandem non-canonical cWW pairsARNA (13-mer)U6U7C8G9*U6||||2_555U7||||2_555C8||||2_555G9||||2_555cWWcWWcWWcWW
13 IL_255D_001255D0.00000Tandem non-canonical cWW pairsARNA (12-mer)U5U6C7G8*U5||||2_656U6||||2_656C7||||2_656G8||||2_656cWWcWW
14 IL_422D_001422D0.16110Tandem non-canonical cWW pairsA+BRNA (12-mer)U7U8C9G10*U19U20C21G22cWWcWWcWWcWW
15 IL_4ERD_0024ERD0.19550Tandem non-canonical cWW pairsC+DRNA (22-mer)U127U128C141G142*U127U128C141G142cWWcWWcWWcWW
16 IL_1ICG_0011ICG0.23420Tandem non-canonical cWW pairsA+BRNA (9-mer)U3U4C5G6*U3U4C5G6cWWcWWcWWcWW
17 IL_1IHA_0011IHA0.23230Tandem non-canonical cWW pairsA+BRNA (9-mer)U3U4C5G6*U3U4C5G6cWWcWWcWWcWW
18 IL_1QBP_0021QBP0.28610Tandem non-canonical cWW pairsB+ARNA (15-mer)U22U23C24G25*U7U8C9G10cWWncWWcWWcWW
19 IL_6L0Y_0026L0Y0.22710ARNA (22-mer)U10U11C12G13*U10||||5_555U11||||5_555C12||||5_555G13||||5_555cWWcWW
20 IL_4WF9_1244WF90.35730X LSU rRNAG2217G2218C2219U2220*A2123U2124U2125C2126cWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUCG*UUCG8
GGUC*GGAC2
CAAGC*GAAG1
AAAC*GCAU1
G(M2G)AC*G(M2G)AC1
GGAC*GGAC1
AGAC*GUAU1
GUAU*AGAC1
ACAC*GCGU1
GACC*GACC1
CCUG*CCUG1
GGCU*AUUC1
Non-Watson-Crick part of the motif
SequenceCounts
UC*UC8
GU*GA2
AAG*AA1
AA*CA1
(M2G)A*(M2G)A1
GA*GA1
GA*UA1
UA*GA1
CA*CG1
AC*AC1
CU*CU1
GC*UU1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (13)
  • (5)
  • Tandem non-canonical cWW pairs (H) (2)
  • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.03 | Avg 0.37 | Max 0.70
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