Motif IL_32955.1 Version IL_32955.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 2-8 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1U6B_004 | 1U6B | 0.5557 | 1 | B | 197-MER | C | 96 | A | 98 | G | 99 | C | 100 | * | G | 119 | A | 120 | A | 121 | G | 122 | cWW | cWW | cWW | |||
2 | IL_6DTD_001 | 6DTD | 0.4002 | 0 | Tandem non-canonical cWW pairs | C | RNA (37-MER) | A | 31 | A | 32 | A | 33 | C | 34 | * | G | 5 | C | 6 | A | 7 | U | 8 | cWW | cWw | ncWB | cWW | |
3 | IL_3CJZ_001 | 3CJZ | 0.3769 | 0 | B+A | RNA (13-mer) | G | 18 | M2G | 19 | A | 20 | C | 21 | * | G | 5 | M2G | 6 | A | 7 | C | 8 | cWW | cWW | cWW | cWW | ||
4 | IL_5LQO_002 | 5LQO | 0.4436 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (10-mer) | G | 4 | G | 5 | A | 6 | C | 7 | * | G | 4 | G | 5 | A | 6 | C | 7 | cWW | cWW | cWW | cWW | |
5 | IL_8C3A_439 | 8C3A | 0.5080 | 0 | Tandem non-canonical cWW pairs (H) | CM | SSU rRNA | A | 909 | G | 910 | A | 911 | C | 912 | * | G | 870 | U | 871 | A | 872 | U | 873 | cWW | cWW | |||
6 | IL_4V88_432 | 4V88 | 0.5003 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | G | 885 | U | 886 | A | 887 | U | 888 | * | A | 924 | G | 925 | A | 926 | C | 927 | cWW | cWW | |||
7 | IL_4V88_430 | 4V88 | 0.3920 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | G | 871 | G | 872 | U | 873 | C | 874 | * | G | 953 | G | 954 | A | 955 | C | 956 | cWW | ||||
8 | IL_8C3A_437 | 8C3A | 0.4112 | 0 | Tandem non-canonical cWW pairs (H) | CM | SSU rRNA | G | 856 | G | 857 | U | 858 | C | 859 | * | G | 938 | G | 939 | A | 940 | C | 941 | cWW | cWW | |||
9 | IL_5TBW_504 | 5TBW | 0.3895 | 0 | 1 | LSU rRNA | A | 3163 | C | 3164 | A | 3165 | C | 3166 | * | G | 3284 | C | 3285 | G | 3286 | U | 3287 | ncWW | ncWW | ncWWa | cWW | ||
10 | IL_1L9A_005 | 1L9A | 0.3297 | 0 | Tandem non-canonical cWW pairs | B | signal recognition particle RNA S domain | G | 156 | A | 157 | C | 158 | C | 159 | * | G | 138 | A | 139 | C | 140 | C | 141 | cWW | ncWWa | ncWW | cWW | |
11 | IL_4K27_001 | 4K27 | 0.2938 | 0 | Tandem non-canonical cWW pairs | U | Myotonic Dystrophy Type 2 RNA | C | 4 | C | 5 | U | 6 | G | 7 | * | C | 49 | C | 50 | U | 51 | G | 52 | cWW | cWW | cWW | ||
12 | IL_413D_001 | 413D | 0.0439 | 0 | Tandem non-canonical cWW pairs | A | RNA (13-mer) | U | 6 | U | 7 | C | 8 | G | 9 | * | U | 6||||2_555 | U | 7||||2_555 | C | 8||||2_555 | G | 9||||2_555 | cWW | cWW | cWW | cWW | |
13 | IL_255D_001 | 255D | 0.0000 | 0 | Tandem non-canonical cWW pairs | A | RNA (12-mer) | U | 5 | U | 6 | C | 7 | G | 8 | * | U | 5||||2_656 | U | 6||||2_656 | C | 7||||2_656 | G | 8||||2_656 | cWW | cWW | |||
14 | IL_422D_001 | 422D | 0.1611 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (12-mer) | U | 7 | U | 8 | C | 9 | G | 10 | * | U | 19 | U | 20 | C | 21 | G | 22 | cWW | cWW | cWW | cWW | |
15 | IL_4ERD_002 | 4ERD | 0.1955 | 0 | Tandem non-canonical cWW pairs | C+D | RNA (22-mer) | U | 127 | U | 128 | C | 141 | G | 142 | * | U | 127 | U | 128 | C | 141 | G | 142 | cWW | cWW | cWW | cWW | |
16 | IL_1ICG_001 | 1ICG | 0.2342 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW | |
17 | IL_1IHA_001 | 1IHA | 0.2323 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW | |
18 | IL_1QBP_002 | 1QBP | 0.2861 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (15-mer) | U | 22 | U | 23 | C | 24 | G | 25 | * | U | 7 | U | 8 | C | 9 | G | 10 | cWW | ncWW | cWW | cWW | |
19 | IL_6L0Y_002 | 6L0Y | 0.2271 | 0 | A | RNA (22-mer) | U | 10 | U | 11 | C | 12 | G | 13 | * | U | 10||||5_555 | U | 11||||5_555 | C | 12||||5_555 | G | 13||||5_555 | cWW | cWW | ||||
20 | IL_4WF9_124 | 4WF9 | 0.3573 | 0 | X | LSU rRNA | G | 2217 | G | 2218 | C | 2219 | U | 2220 | * | A | 2123 | U | 2124 | U | 2125 | C | 2126 | cWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUCG*UUCG | 8 |
GGUC*GGAC | 2 |
CAAGC*GAAG | 1 |
AAAC*GCAU | 1 |
G(M2G)AC*G(M2G)AC | 1 |
GGAC*GGAC | 1 |
AGAC*GUAU | 1 |
GUAU*AGAC | 1 |
ACAC*GCGU | 1 |
GACC*GACC | 1 |
CCUG*CCUG | 1 |
GGCU*AUUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UC*UC | 8 |
GU*GA | 2 |
AAG*AA | 1 |
AA*CA | 1 |
(M2G)A*(M2G)A | 1 |
GA*GA | 1 |
GA*UA | 1 |
UA*GA | 1 |
CA*CG | 1 |
AC*AC | 1 |
CU*CU | 1 |
GC*UU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (13)
- (5)
- Tandem non-canonical cWW pairs (H) (2)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.37 | Max 0.70
Coloring options: