Motif IL_32987.1 Version IL_32987.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-3 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_067 | 4CUX | 0.9709 | 0 | 2 | SSU rRNA | U | 1290 | G | 1291 | G | 1292 | * | C | 1323 | G | 1324 | A | 1325 | cWW | cWW | |
| 2 | IL_4CUX_036 | 4CUX | 0.9432 | 0 | 2 | SSU rRNA | C | 646 | G | 647 | G | 648 | * | C | 686 | G | 687 | G | 688 | ncWW | ncWW | |
| 3 | IL_3U5F_012 | 3U5F | 0.8769 | 0 | 6 | SSU rRNA | A | 162 | G | 163 | A | 164 | * | U | 150 | G | 151 | U | 152 | cWW | cWW | |
| 4 | IL_3U5F_006 | 3U5F | 0.9282 | 3 | 6 | SSU rRNA | U | 58 | C | 59 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW |
| 5 | IL_4CUV_084 | 4CUV | 0.1004 | 4 | 1 | LSU rRNA | A | 1901 | G | 1902 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | |
| 6 | IL_4A1B_081 | 4A1B | 0.0000 | 4 | 1 | LSU rRNA | A | 1925 | G | 1926 | G | 1930 | * | C | 2328 | U | 2329 | U | 2331 | cWW | cWW | |
| 7 | IL_3U5H_085 | 3U5H | 0.0809 | 4 | 5 | LSU rRNA | A | 1901 | G | 1902 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGG*CUGU | 3 |
| UGG*CGA | 1 |
| CGG*CGG | 1 |
| AGA*UGU | 1 |
| UCUAAG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 3 |
| GUCG*UG | 3 |
| CUAA*U | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_32987.1 | Only in the parent motif |
|---|---|---|---|
| IL_71837.1 Compare | IL_3U5H_085, IL_3U5F_006, IL_4A1B_081 | IL_3U5F_012, IL_4CUV_084, IL_4CUX_067, IL_4CUX_036 | IL_4BPP_006, IL_2QBG_040, IL_1S72_062, IL_4A1C_001, IL_4IOA_037 |
| IL_66654.1 Compare | IL_3U5F_012 | IL_4CUV_084, IL_4CUX_036, IL_3U5F_006, IL_4CUX_067, IL_3U5H_085, IL_4A1B_081 | IL_4JK0_003, IL_4M4O_004, IL_4M6D_013 |
Children motifs
| Child motif | Common motif instances | Only in IL_32987.1 | Only in the child motif |
|---|---|---|---|
| IL_53587.1 Compare | IL_4CUV_084, IL_3U5H_085, IL_4A1B_081 | IL_3U5F_012, IL_3U5F_006, IL_4CUX_067, IL_4CUX_036 | IL_1S72_046, IL_3LOA_003, IL_4KYY_002, IL_4QCN_030, IL_2QBG_045, IL_4TS2_003, IL_3U5F_093, IL_1VW3_049, IL_4QCN_041, IL_4CUV_064, IL_2QBG_065, IL_4QCN_063, IL_3U5H_062, IL_1VX6_063, IL_1VW3_035, IL_3U5H_052, IL_1VW3_070, IL_1S72_062, IL_4IOA_043 |
| IL_37688.1 Compare | IL_3U5F_012, IL_4CUX_067, IL_4CUX_036 | IL_4CUV_084, IL_3U5F_006, IL_3U5H_085, IL_4A1B_081 | IL_2ZI0_001, IL_1VWW_097 |
| IL_70102.1 Compare | IL_3U5F_006 | IL_3U5F_012, IL_4CUV_084, IL_4CUX_036, IL_4CUX_067, IL_3U5H_085, IL_4A1B_081 |
- Annotations
-
- (7)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.61 | Max 0.97
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