Motif IL_33742.1 Version IL_33742.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-4 | 2-7 | 4-7 | 5-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1ET4_001 | 1ET4 | 0.0000 | 3 | Vitamin B12 Aptamer | A | RNA APTAMER, 35-MER | C | 211 | U | 215 | A | 216 | A | 217 | C | 218 | * | G | 228 | C | 229 | G | 230 | cWW | ncWW | ncWW | cWW | |
2 | IL_1ET4_009 | 1ET4 | 0.0457 | 3 | E | RNA APTAMER, 35-MER | C | 111 | U | 115 | A | 116 | A | 117 | C | 118 | * | G | 128 | C | 129 | G | 130 | cWW | ncWW | ncWW | cWW | ||
3 | IL_1ET4_003 | 1ET4 | 0.0508 | 3 | B | RNA APTAMER, 35-MER | C | 311 | U | 315 | A | 316 | A | 317 | C | 318 | * | G | 328 | C | 329 | G | 330 | cWW | ncWW | ncWW | cWW | ||
4 | IL_1ET4_007 | 1ET4 | 0.0597 | 3 | D | RNA APTAMER, 35-MER | C | 511 | U | 515 | A | 516 | A | 517 | C | 518 | * | G | 528 | C | 529 | G | 530 | cWW | ncWW | ncWW | cWW | ||
5 | IL_1ET4_005 | 1ET4 | 0.0555 | 3 | C | RNA APTAMER, 35-MER | C | 411 | U | 415 | A | 416 | A | 417 | C | 418 | * | G | 428 | C | 429 | G | 430 | cWW | ncWW | ncWW | cWW | ||
6 | IL_1S72_082 | 1S72 | 0.6277 | 0 | 0 | LSU rRNA | G | 2524 | G | 2525 | C | 2526 | U | 2527 | U | 2528 | * | G | 2494 | U | 2495 | C | 2496 | cWW | cSH | cWw | cWW | ||
7 | IL_1XJR_001 | 1XJR | 0.8470 | 0 | Isolated basepair with bulged bases | A | s2m RNA | C | 9 | C | 10 | G | 11 | A | 12 | G | 13 | * | C | 39 | A | 40 | G | 41 | cWW | cWW | |||
8 | IL_2OEU_001 | 2OEU | 0.8543 | 0 | B+A | RNA (20-mer) | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | * | A | 3 | U | 4 | G | 5 | cWW | cWW | cWW | |||
9 | IL_3F1H_091 | 3F1H | 0.9086 | 0 | A | 23S RRNA | G | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | * | A | 2459 | U | 2460 | C | 2461 | cWW | cSH | cWw | cWW | ||
10 | IL_2ZJR_087 | 2ZJR | 0.9056 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | * | A | 2438 | U | 2439 | C | 2440 | cWW | cSH | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGCAUAAC*GCG | 5 |
GGCUU*GUC | 1 |
CCGAG*CAG | 1 |
CCAAU*AUG | 1 |
AUC*GGUUU | 1 |
GGUUU*AUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GCAUAA*C | 5 |
GCU*U | 1 |
CGA*A | 1 |
CAA*U | 1 |
U*GUU | 1 |
GUU*U | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_33742.1 | Only in the child motif |
---|---|---|---|
IL_06751.1 Compare | IL_2OEU_001, IL_1ET4_009, IL_1ET4_007, IL_1ET4_005, IL_1ET4_003, IL_1ET4_001 | IL_1S72_082, IL_1XJR_001, IL_3F1H_091, IL_2ZJR_087 | IL_2XXA_002, IL_2XXA_009, IL_2XZM_073 |
IL_16722.1 Compare | IL_1S72_082, IL_2ZJR_087 | IL_1XJR_001, IL_3F1H_091, IL_2OEU_001, IL_1ET4_009, IL_1ET4_007, IL_1ET4_005, IL_1ET4_003, IL_1ET4_001 | IL_2QBG_093 |
IL_76618.1 Compare | IL_1XJR_001 | IL_3F1H_091, IL_2ZJR_087, IL_1S72_082, IL_2OEU_001, IL_1ET4_009, IL_1ET4_007, IL_1ET4_005, IL_1ET4_003, IL_1ET4_001 | IL_1FJG_003 |
- Annotations
-
- (7)
- Vitamin B12 Aptamer (1)
- Isolated basepair with bulged bases (1)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.04 | Avg 0.54 | Max 0.92
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