#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 81-82-42-74-75-6
1 IL_1ET4_0011ET40.00003Vitamin B12 AptamerARNA APTAMER, 35-MERC211U215A216A217C218*G228C229G230cWWncWWncWWcWW
2 IL_1ET4_0091ET40.04573ERNA APTAMER, 35-MERC111U115A116A117C118*G128C129G130cWWncWWncWWcWW
3 IL_1ET4_0031ET40.05083BRNA APTAMER, 35-MERC311U315A316A317C318*G328C329G330cWWncWWncWWcWW
4 IL_1ET4_0071ET40.05973DRNA APTAMER, 35-MERC511U515A516A517C518*G528C529G530cWWncWWncWWcWW
5 IL_1ET4_0051ET40.05553CRNA APTAMER, 35-MERC411U415A416A417C418*G428C429G430cWWncWWncWWcWW
6 IL_1S72_0821S720.627700 LSU rRNAG2524G2525C2526U2527U2528*G2494U2495C2496cWWcSHcWwcWW
7 IL_1XJR_0011XJR0.84700Isolated basepair with bulged basesAs2m RNAC9C10G11A12G13*C39A40G41cWWcWW
8 IL_2OEU_0012OEU0.85430B+ARNA (20-mer)C14C15A16A17U18*A3U4G5cWWcWWcWW
9 IL_3F1H_0913F1H0.90860A23S RRNAG2489G2490U2491U2492U2493*A2459U2460C2461cWWcSHcWwcWW
10 IL_2ZJR_0872ZJR0.90560Major groove minor groove platform with extra cWW (H)X LSU rRNAG2468G2469U2470U2471U2472*A2438U2439C2440cWWcSHcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGCAUAAC*GCG5
GGCUU*GUC1
CCGAG*CAG1
CCAAU*AUG1
AUC*GGUUU1
GGUUU*AUC1
Non-Watson-Crick part of the motif
SequenceCounts
GCAUAA*C5
GCU*U1
CGA*A1
CAA*U1
U*GUU1
GUU*U1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_33742.1Only in the child motif
IL_06751.1
Compare
IL_2OEU_001, IL_1ET4_009, IL_1ET4_007, IL_1ET4_005, IL_1ET4_003, IL_1ET4_001IL_1S72_082, IL_1XJR_001, IL_3F1H_091, IL_2ZJR_087IL_2XXA_002, IL_2XXA_009, IL_2XZM_073
IL_16722.1
Compare
IL_1S72_082, IL_2ZJR_087IL_1XJR_001, IL_3F1H_091, IL_2OEU_001, IL_1ET4_009, IL_1ET4_007, IL_1ET4_005, IL_1ET4_003, IL_1ET4_001IL_2QBG_093
IL_76618.1
Compare
IL_1XJR_001IL_3F1H_091, IL_2ZJR_087, IL_1S72_082, IL_2OEU_001, IL_1ET4_009, IL_1ET4_007, IL_1ET4_005, IL_1ET4_003, IL_1ET4_001IL_1FJG_003
Annotations
  • (7)
  • Vitamin B12 Aptamer (1)
  • Isolated basepair with bulged bases (1)
  • Major groove minor groove platform with extra cWW (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.04 | Avg 0.54 | Max 0.92
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