Motif IL_15768.1 Version IL_15768.1 of this group appears in releases 1.5 to 1.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZI0_001 | 2ZI0 | 0.9245 | 0 | Isolated near basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | |
| 2 | IL_3V2F_025 | 3V2F | 0.8062 | 1 | A | 23S Ribosomal RNA | G | 931 | A | 933 | G | 934 | * | C | 844 | G | 845 | C | 846 | cWW | cWW | ||
| 3 | IL_1GID_013 | 1GID | 0.0000 | 5 | B | P4-P6 RNA RIBOZYME DOMAIN | U | 182 | A | 187 | C | 189 | * | G | 134 | U | 135 | A | 136 | cWW | cHW | cWW | |
| 4 | IL_1GID_006 | 1GID | 0.1014 | 5 | A | P4-P6 RNA RIBOZYME DOMAIN | U | 182 | A | 187 | C | 189 | * | G | 134 | U | 135 | A | 136 | cWW | cHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAUAAGC*GUA | 2 |
| UUA*UUA | 1 |
| GGAG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUAAG*U | 2 |
| U*U | 1 |
| GA*G | 1 |
Release history
| Release | 1.5 |
|---|---|
| Date | 2013-08-03 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_15768.1 | Only in the parent motif |
|---|---|---|---|
| IL_06390.3 Compare | IL_3V2F_025, IL_1GID_006, IL_1GID_013 | IL_2ZI0_001 | IL_420D_002, IL_420D_001, IL_2AW7_011, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_3NJ7_001, IL_4E5C_001, IL_1X8W_005, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011 |
| IL_34156.6 Compare | IL_2ZI0_001 | IL_3V2F_025, IL_1GID_006, IL_1GID_013 | IL_3U5F_012, IL_1SI3_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_15768.1 | Only in the child motif |
|---|---|---|---|
| IL_35043.1 Compare | IL_1GID_006, IL_1GID_013 | IL_3V2F_025, IL_2ZI0_001 | IL_1X8W_005 |
| IL_17212.1 Compare | IL_3V2F_025, IL_2ZI0_001 | IL_1GID_006, IL_1GID_013 | IL_4ERD_003, IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045, IL_3V2F_030, IL_3V2F_042 |
- Annotations
-
- (3)
- Isolated near basepair (1)
- Basepair signature
- cWW-cHW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.57 | Max 0.96
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