#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_4BPP_0264BPP0.82691A18S RRNAG477G478G479*C492A494C495cWWtSHcWW
2 IL_4IOA_0774IOA0.33501Isolated tHS basepair with bulgesX LSU rRNAC2215G2216G2218*U2064A2065G2066cWWtSHcWW
3 IL_2QBG_0822QBG0.29071B23S rRNAU2236G2237G2239*U2081A2082G2083cWWtSHcWW
4 IL_3U5H_1003U5H0.32021525S rRNAU2604G2605G2607*U2423A2424G2425cWWtSHcWW
5 IL_3V2F_0123V2F0.16531A23S Ribosomal RNAU350G351G353*C288A289G290cWWtSHcWW
6 IL_1S72_0761S720.00001Isolated tHS basepair with bulges (H)0 LSU rRNAC2269G2270G2272*C2122A2123G2124cWWtSHcWW
7 IL_3V2F_0793V2F0.09921A23S Ribosomal RNAC2236G2237G2239*C2081A2082G2083cWWtSHcWW
8 IL_3U5H_1043U5H0.24712525S rRNAA2686G2687G2690*C2666A2667U2668cWWtSHcWW
9 IL_4IOA_0824IOA0.20262Isolated tHS basepair with bulgesX LSU rRNAU2296G2297G2300*C2276A2277A2278cWWntSHcWW
10 IL_4A1B_1024A1B0.21182126S RRNAC2675G2676G2679*C2655A2656G2657cWWtSHcWW
11 IL_1S72_0781S720.279220 LSU rRNAC2351G2352G2355*C2331A2332G2333cWWtSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGGG*UAG2
CGGG*CAG2
GGG*CUAC1
CGGG*UAG1
UGGG*CAG1
AGUAG*CAU1
UGUAG*CAA1
CGUAG*CAG1
CGAAG*CAG1
Non-Watson-Crick part of the motif
SequenceCounts
GG*A6
GUA*A3
G*UA1
GAA*A1
Annotations
  • (8)
  • Isolated tHS basepair with bulges (2)
  • Isolated tHS basepair with bulges (H) (1)
  • Basepair signature
    cWW-tSH-cWW
    Heat map statistics
    Min 0.10 | Avg 0.35 | Max 0.96
    Help

    Coloring options:

    IL_4BPP_026:IL_4BPP_026 = 0IL_4BPP_026:IL_4IOA_077 = 0.7774IL_4BPP_026:IL_2QBG_082 = 0.8157IL_4BPP_026:IL_3U5H_100 = 0.8822IL_4BPP_026:IL_3V2F_012 = 0.8277IL_4BPP_026:IL_1S72_076 = 0.8269IL_4BPP_026:IL_3V2F_079 = 0.8073IL_4BPP_026:IL_3U5H_104 = 0.7991IL_4BPP_026:IL_4IOA_082 = 0.8668IL_4BPP_026:IL_4A1B_102 = 0.9098IL_4BPP_026:IL_1S72_078 = 0.9556IL_4IOA_077:IL_4BPP_026 = 0.7774IL_4IOA_077:IL_4IOA_077 = 0IL_4IOA_077:IL_2QBG_082 = 0.1815IL_4IOA_077:IL_3U5H_100 = 0.2011IL_4IOA_077:IL_3V2F_012 = 0.2945IL_4IOA_077:IL_1S72_076 = 0.335IL_4IOA_077:IL_3V2F_079 = 0.3091IL_4IOA_077:IL_3U5H_104 = 0.345IL_4IOA_077:IL_4IOA_082 = 0.3825IL_4IOA_077:IL_4A1B_102 = 0.4082IL_4IOA_077:IL_1S72_078 = 0.412IL_2QBG_082:IL_4BPP_026 = 0.8157IL_2QBG_082:IL_4IOA_077 = 0.1815IL_2QBG_082:IL_2QBG_082 = 0IL_2QBG_082:IL_3U5H_100 = 0.1712IL_2QBG_082:IL_3V2F_012 = 0.2127IL_2QBG_082:IL_1S72_076 = 0.2907IL_2QBG_082:IL_3V2F_079 = 0.2882IL_2QBG_082:IL_3U5H_104 = 0.3685IL_2QBG_082:IL_4IOA_082 = 0.3835IL_2QBG_082:IL_4A1B_102 = 0.4084IL_2QBG_082:IL_1S72_078 = 0.4169IL_3U5H_100:IL_4BPP_026 = 0.8822IL_3U5H_100:IL_4IOA_077 = 0.2011IL_3U5H_100:IL_2QBG_082 = 0.1712IL_3U5H_100:IL_3U5H_100 = 0IL_3U5H_100:IL_3V2F_012 = 0.2684IL_3U5H_100:IL_1S72_076 = 0.3202IL_3U5H_100:IL_3V2F_079 = 0.3041IL_3U5H_100:IL_3U5H_104 = 0.4047IL_3U5H_100:IL_4IOA_082 = 0.3938IL_3U5H_100:IL_4A1B_102 = 0.3981IL_3U5H_100:IL_1S72_078 = 0.4167IL_3V2F_012:IL_4BPP_026 = 0.8277IL_3V2F_012:IL_4IOA_077 = 0.2945IL_3V2F_012:IL_2QBG_082 = 0.2127IL_3V2F_012:IL_3U5H_100 = 0.2684IL_3V2F_012:IL_3V2F_012 = 0IL_3V2F_012:IL_1S72_076 = 0.1653IL_3V2F_012:IL_3V2F_079 = 0.1804IL_3V2F_012:IL_3U5H_104 = 0.3305IL_3V2F_012:IL_4IOA_082 = 0.3031IL_3V2F_012:IL_4A1B_102 = 0.3013IL_3V2F_012:IL_1S72_078 = 0.3419IL_1S72_076:IL_4BPP_026 = 0.8269IL_1S72_076:IL_4IOA_077 = 0.335IL_1S72_076:IL_2QBG_082 = 0.2907IL_1S72_076:IL_3U5H_100 = 0.3202IL_1S72_076:IL_3V2F_012 = 0.1653IL_1S72_076:IL_1S72_076 = 0IL_1S72_076:IL_3V2F_079 = 0.0992IL_1S72_076:IL_3U5H_104 = 0.2471IL_1S72_076:IL_4IOA_082 = 0.2026IL_1S72_076:IL_4A1B_102 = 0.2118IL_1S72_076:IL_1S72_078 = 0.2792IL_3V2F_079:IL_4BPP_026 = 0.8073IL_3V2F_079:IL_4IOA_077 = 0.3091IL_3V2F_079:IL_2QBG_082 = 0.2882IL_3V2F_079:IL_3U5H_100 = 0.3041IL_3V2F_079:IL_3V2F_012 = 0.1804IL_3V2F_079:IL_1S72_076 = 0.0992IL_3V2F_079:IL_3V2F_079 = 0IL_3V2F_079:IL_3U5H_104 = 0.2459IL_3V2F_079:IL_4IOA_082 = 0.2471IL_3V2F_079:IL_4A1B_102 = 0.2429IL_3V2F_079:IL_1S72_078 = 0.2957IL_3U5H_104:IL_4BPP_026 = 0.7991IL_3U5H_104:IL_4IOA_077 = 0.345IL_3U5H_104:IL_2QBG_082 = 0.3685IL_3U5H_104:IL_3U5H_100 = 0.4047IL_3U5H_104:IL_3V2F_012 = 0.3305IL_3U5H_104:IL_1S72_076 = 0.2471IL_3U5H_104:IL_3V2F_079 = 0.2459IL_3U5H_104:IL_3U5H_104 = 0IL_3U5H_104:IL_4IOA_082 = 0.1805IL_3U5H_104:IL_4A1B_102 = 0.225IL_3U5H_104:IL_1S72_078 = 0.2087IL_4IOA_082:IL_4BPP_026 = 0.8668IL_4IOA_082:IL_4IOA_077 = 0.3825IL_4IOA_082:IL_2QBG_082 = 0.3835IL_4IOA_082:IL_3U5H_100 = 0.3938IL_4IOA_082:IL_3V2F_012 = 0.3031IL_4IOA_082:IL_1S72_076 = 0.2026IL_4IOA_082:IL_3V2F_079 = 0.2471IL_4IOA_082:IL_3U5H_104 = 0.1805IL_4IOA_082:IL_4IOA_082 = 0IL_4IOA_082:IL_4A1B_102 = 0.1544IL_4IOA_082:IL_1S72_078 = 0.1989IL_4A1B_102:IL_4BPP_026 = 0.9098IL_4A1B_102:IL_4IOA_077 = 0.4082IL_4A1B_102:IL_2QBG_082 = 0.4084IL_4A1B_102:IL_3U5H_100 = 0.3981IL_4A1B_102:IL_3V2F_012 = 0.3013IL_4A1B_102:IL_1S72_076 = 0.2118IL_4A1B_102:IL_3V2F_079 = 0.2429IL_4A1B_102:IL_3U5H_104 = 0.225IL_4A1B_102:IL_4IOA_082 = 0.1544IL_4A1B_102:IL_4A1B_102 = 0IL_4A1B_102:IL_1S72_078 = 0.1507IL_1S72_078:IL_4BPP_026 = 0.9556IL_1S72_078:IL_4IOA_077 = 0.412IL_1S72_078:IL_2QBG_082 = 0.4169IL_1S72_078:IL_3U5H_100 = 0.4167IL_1S72_078:IL_3V2F_012 = 0.3419IL_1S72_078:IL_1S72_076 = 0.2792IL_1S72_078:IL_3V2F_079 = 0.2957IL_1S72_078:IL_3U5H_104 = 0.2087IL_1S72_078:IL_4IOA_082 = 0.1989IL_1S72_078:IL_4A1B_102 = 0.1507IL_1S72_078:IL_1S72_078 = 0IL_4BPP_026IL_4IOA_077IL_2QBG_082IL_3U5H_100IL_3V2F_012IL_1S72_076IL_3V2F_079IL_3U5H_104IL_4IOA_082IL_4A1B_102IL_1S72_078Discrepancy0.000.200.400.600.80
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