Motif IL_38186.2 Version IL_38186.2 of this group appears in releases 3.88 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_6CZR_134	6CZR	0.1989	5		1a	SSU rRNA	C	553	G	559	*	C	858	G	859	cWW	cWW
2	IL_4LFB_022	4LFB	0.1474	5		A	SSU rRNA	C	569	G	575	*	C	880	G	881	cWW	cWW
3	IL_5J7L_026	5J7L	0.1537	5		AA	SSU rRNA	C	569	G	575	*	C	880	G	881	cWW	cWW
4	IL_4V88_416	4V88	0.0984	5		A6	SSU rRNA	G	616	A	622	*	U	1104	C	1105	cWW	cWW
5	IL_8C3A_426	8C3A	0.0000	5		CM	SSU rRNA	G	614	A	620	*	U	1089	C	1090	cWW	cWW
6	IL_1NBS_009	1NBS	0.1432	2	Major groove intercalation	B	RNase P class B	U	228	A	231	*	U	181	G	182	cWW	cWW
7	IL_1U9S_003	1U9S	0.1701	2	Major groove intercalation	A	RIBONUCLEASE P	C	224	A	227	*	U	116	G	117	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUAAAG*CG	3
GUUAAAA*UC	2
UAAA*UG	1
CAAA*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAAA*	3
UUAAA*	2
AA*	2

Release history

Release	3.88
Date	2024-09-11
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Major groove intercalation (2)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.07 | Avg 0.16 | Max 0.28

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Coloring options: Nucleotide numbers

Motif IL_38186.2 Version IL_38186.2 of this group appears in releases 3.88 to 3.88 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_38186.2 Version IL_38186.2 of this group appears in releases 3.88 to 3.88

Download

Csv

Json