Motif IL_38186.2 Version IL_38186.2 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_134 | 6CZR | 0.1989 | 5 | 1a | SSU rRNA | C | 553 | G | 559 | * | C | 858 | G | 859 | cWW | cWW | |
| 2 | IL_4LFB_022 | 4LFB | 0.1474 | 5 | A | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
| 3 | IL_5J7L_026 | 5J7L | 0.1537 | 5 | AA | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
| 4 | IL_4V88_416 | 4V88 | 0.0984 | 5 | A6 | SSU rRNA | G | 616 | A | 622 | * | U | 1104 | C | 1105 | cWW | cWW | |
| 5 | IL_8C3A_426 | 8C3A | 0.0000 | 5 | CM | SSU rRNA | G | 614 | A | 620 | * | U | 1089 | C | 1090 | cWW | cWW | |
| 6 | IL_1NBS_009 | 1NBS | 0.1432 | 2 | Major groove outside cWW, minor groove, intercalation pocket | B | RNase P class B | U | 228 | A | 231 | * | U | 181 | G | 182 | cWW | cWW |
| 7 | IL_1U9S_003 | 1U9S | 0.1701 | 2 | Major groove outside cWW, minor groove, intercalation pocket | A | RIBONUCLEASE P | C | 224 | A | 227 | * | U | 116 | G | 117 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAAG*CG | 3 |
| GUUAAAA*UC | 2 |
| UAAA*UG | 1 |
| CAAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAA* | 3 |
| UUAAA* | 2 |
| AA* | 2 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Major groove outside cWW, minor groove, intercalation pocket (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.16 | Max 0.28
Coloring options: