#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-41-52-33-54-5
1 IL_2QBG_0952QBG0.66240B23S rRNAC2507G2508*U2580G2581G2582cWWcWWchH
2 IL_4IOA_0904IOA0.64500Major groove platform (H)X LSU rRNAC2486G2487*U2559G2560G2561cWWcWWchH
3 IL_4A1B_1114A1B0.65190126S RRNAC2864G2865*U2937G2938G2939cWWcWW
4 IL_2QBG_0922QBG0.65290B23S rRNAU2493G2494*U2457G2458A2459cWWcWW
5 IL_4A1B_1084A1B0.42580126S RRNAU2850G2851*U2814U2815G2816cWWcWW
6 IL_3P49_0073P490.42390AGlycine riboswitchG38A39*U49U50C51ncWWcWWncSH
7 IL_3P49_0103P490.34510AGlycine riboswitchG113G114*C140U141C142cWWcWWncSH
8 IL_2QBG_0252QBG0.30240B23S rRNAG757C758*G738A739C740cWWcWWcSH
9 IL_3OWZ_0033OWZ0.21140ADomain II of glycine riboswitchG35G36*C68U69C70cWWcWWcSH
10 IL_3OWZ_0073OWZ0.21320BDomain II of glycine riboswitchG35G36*C68U69C70cWWcWWcSH
11 IL_3D0U_0043D0U0.18901Major groove platform; stack outside cWWALysine Riboswitch RNAG51G52*C35A36C38cWWcWWcSH
12 IL_2QBG_0912QBG0.13410B23S rRNAG2454G2455*C2496A2497C2498cWWcWWcSH
13 IL_1S72_0801S720.12270Major groove platform (H)0 LSU rRNAG2489A2490*U2531A2532C2533cWWcWWcSH
14 IL_4IOA_0864IOA0.10160Major groove platform (H)X LSU rRNAG2433G2434*C2475A2476C2477cWWcWWncSH
15 IL_4NVV_0884NVV0.00000A23S Ribosomal RNAG2466G2467*C2508A2509C2510cWWcWWcSH
16 IL_1S03_0081S030.13640Major groove platformB47-MERU16G17*C34A35A36tHScWWcWWcSH
17 IL_1VW3_0741VW30.14800A21S ribosomal RNAG2720G2721*C2762A2763C2764cWWcWWcSH
18 IL_4IOA_0734IOA0.24910Major groove platform (H)X LSU rRNAC2596G2597*C2033A2034G2035cWWcWWcSH
19 IL_4NVV_0784NVV0.26480A23S Ribosomal RNAC2629G2630*C2072A2073G2074cWWcWWcSH
20 IL_2QBG_0782QBG0.21000B23S rRNAU2617G2618*C2050A2051A2052tHScWWcWWcSH
21 IL_1VW3_0621VW30.21850A21S ribosomal RNAU2884G2885*C1950A1951A1952tHScWWcWWcSH
22 IL_4IOA_0874IOA0.26790X LSU rRNAU2472G2473*U2436G2437A2438ntHScWWcWW
23 IL_1VW3_0751VW30.28810A21S ribosomal RNAU2759G2760*U2723A2724A2725tHScWWcWWcSH
24 IL_2AW7_0312AW70.24460A16S ribosomal RNAU644G645*U594A595A596cWWcWWncSH
25 IL_1I6U_0031I6U0.25040D16S RRNA FRAGMENTU28G29*U9A10A11ntHScWWcWWcSH
26 IL_4A1B_0214A1B0.32300126S RRNAU473G474*U503A504A505cWWncWWncSH
27 IL_4A1B_1064A1B0.27440126S RRNAG2811G2812*U2853C2854C2855cWWcWWncSH
28 IL_3U5H_1083U5H0.28870525S rRNAG2823G2824*U2865U2866C2867cWWcWWncSHcSH
29 IL_4IOA_0844IOA0.22070Major groove platformX LSU rRNAG2393G2394*U2380A2381C2382cWWcWW
30 IL_1XJR_0021XJR0.23710Major groove platformAs2m RNAG13G14*U37A38C39cWWcWWcSH
31 IL_4NVV_0084NVV0.23350A23S Ribosomal RNAG291G292*U392A393C394cWWcWW
32 IL_4NVV_0864NVV0.24650A23S Ribosomal RNAG2426G2427*U2413C2414C2415cWWcWWncSH
33 IL_1G1X_0021G1X0.28880Major groove platformD+E16S RIBOSOMAL RNAG657G658*C747C748C749cWWcWWncSH
34 IL_1VW3_0731VW30.34590A21S ribosomal RNAG2681G2682*C2668A2669C2670cWWcWW
35 IL_4BPP_0774BPP0.33050A18S RRNAU1469C1470*G1479U1480A1481cWWcWWncSH
36 IL_3NKB_0023NKB0.29550Major groove platformBThe hepatitis delta virus ribozymeU47C48*G55U56A57cWWcWWcSH
37 IL_1FJG_0281FJG0.31230Major groove platform (H)A SSU rRNAG657G658*C747C748C749cWWcWWncSH
38 IL_2QBG_0442QBG0.37401B23S rRNAU1101C1102*G1087A1089A1090cWWcWWncSH
39 IL_3DIR_0043DIR0.34431ARNA (174-MER)G54G55*C38A39C41cWWcWW
40 IL_1QA6_0021QA60.39811C58 NUCLEOTIDE RIBOSOMAL RNA DOMAINU151C152*G137A139A140ntHScWWcWWcSH
41 IL_1FJG_0241FJG0.31000Major groove platform (H)A SSU rRNAG644C645*G594G595C596ntHScWWcWWncSH
42 IL_1S72_0611S720.429010 LSU rRNAU2034C2035*G1744G1745A1747tHScWWcWW
43 IL_1VW3_0481VW30.45211A21S ribosomal RNAU1893C1894*G1618G1619A1621tHScWWcWW
44 IL_3U5H_0843U5H0.46341525S rRNAU2336C2337*G1898G1899A1901tHScWWcWW
45 IL_2QBG_0642QBG0.46831B23S rRNAU1993C1994*G1666G1667A1669tHScWWcWW
46 IL_4NVV_0664NVV0.42051A23S Ribosomal RNAU2015C2016*G1713G1714A1716tHScWWcWW
47 IL_4A1B_0804A1B0.47571126S RRNAU2331C2332*G1922G1923A1925tHScWWcWW
48 IL_1G1X_0011G1X0.40381Major groove platform; stack outside cWWD+E16S RIBOSOMAL RNAG654A655*U751G752C754tHScWWcWWncSH
49 IL_2AW7_0342AW70.39131A16S ribosomal RNAG654A655*U751G752C754tHScWWcWW
50 IL_1FJG_0271FJG0.39061Major groove platform; stack outside cWW (H)A SSU rRNAG654A655*U751G752C754tHScWWcWWncSH
51 IL_1F7Y_0011F7Y0.40531B16S RIBOSOMAL RNA FRAGMENTG18A19*U50G51C53tHScWWcWWncSH
52 IL_2QBG_0492QBG0.49801B23S rRNAA1603C1604*G1310G1311U1313ntHScWWcWW
53 IL_3Q1Q_0013Q1Q0.51150BRNase P RNAG328C329*G51U52C53cWWcWWncSH
54 IL_3SUX_0023SUX0.53210Major groove platformX THF riboswitchG37A38*U47G48U49cWWncWW
55 IL_4A1B_0874A1B0.57221126S RRNAU2195G2196*U2236A2237A2239cWWcWW
56 IL_2QBG_0012QBG0.50160A5S rRNAC17G18*U65A66G67cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GG*CAC5
UC*GGAA5
UG*UAA4
GA*UGAC4
CG*UGG3
GG*CUC3
UG*CAA3
GG*UAC3
UG*UGA2
GG*CAUC2
GG*CCC2
UC*GUA2
UC*GAAA2
UG*UUG1
GA*UUC1
GC*GAC1
GA*UAC1
CG*CAG1
CAG*CG1
GG*UCC1
GG*UUC1
UCC*GG1
GC*GGC1
GGAA*UC1
AC*GGUU1
GC*GUC1
GA*UGU1
UG*UAAA1
CG*UAG1
Non-Watson-Crick part of the motif
SequenceCounts
*A19
*U9
*GA9
*G7
*C3
*AA3
*AU2
A*1
C*1
GA*1
*GU1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_39199.5Only in the parent motif
IL_39199.4
Compare
IL_2QBG_091, IL_3P49_010, IL_1FJG_028, IL_4IOA_084, IL_1FJG_027, IL_1FJG_024, IL_1S72_080, IL_4IOA_073, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_3P49_007, IL_4A1B_087, IL_4A1B_080, IL_4BPP_077, IL_1XJR_002, IL_4IOA_087, IL_2QBG_092, IL_2QBG_095, IL_4IOA_086, IL_3Q1Q_001, IL_4A1B_021, IL_1I6U_003, IL_4A1B_108, IL_4A1B_106, IL_3DIR_004, IL_2QBG_078, IL_1QA6_002, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_4A1B_111, IL_3OWZ_003, IL_4IOA_090, IL_3SUX_002IL_4NVV_008, IL_4NVV_086, IL_1VW3_062, IL_4NVV_088, IL_1VW3_048, IL_4NVV_078, IL_1VW3_073, IL_4NVV_066, IL_1VW3_074, IL_1VW3_075IL_3V2F_090, IL_3V2F_087, IL_3V2F_097, IL_3V2F_089, IL_3V2F_075, IL_3V2F_009, IL_3V2F_063

Children motifs

Child motifCommon motif instancesOnly in IL_39199.5Only in the child motif
IL_39199.6
Compare
IL_2QBG_091, IL_3P49_010, IL_1VW3_048, IL_1FJG_028, IL_4IOA_084, IL_1FJG_027, IL_1FJG_024, IL_4NVV_086, IL_1S72_080, IL_4IOA_073, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_4NVV_008, IL_2QBG_044, IL_1VW3_062, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_3P49_007, IL_4A1B_087, IL_4A1B_080, IL_4NVV_088, IL_4BPP_077, IL_1XJR_002, IL_4IOA_087, IL_2QBG_092, IL_2QBG_095, IL_4IOA_086, IL_3Q1Q_001, IL_4A1B_021, IL_1I6U_003, IL_4A1B_108, IL_1VW3_073, IL_4A1B_106, IL_3DIR_004, IL_1VW3_074, IL_1VW3_075, IL_2QBG_078, IL_1QA6_002, IL_4NVV_078, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_4A1B_111, IL_3OWZ_003, IL_4IOA_090, IL_3SUX_002, IL_4NVV_066IL_4CUV_114, IL_4CUV_117, IL_4CUV_083, IL_4CUV_112, IL_4CUX_043, IL_4L81_002
Annotations
  • (41)
  • Major groove platform (H) (6)
  • Major groove platform (6)
  • Major groove platform; stack outside cWW (2)
  • Major groove platform; stack outside cWW (H) (1)
  • Basepair signature
    cWW-tHS-cSH-cWW
    Heat map statistics
    Min 0.06 | Avg 0.46 | Max 0.91
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