#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-41-52-33-54-5
1 IL_2QBG_0952QBG0.65280B23S rRNAC2507G2508*U2580G2581G2582cWWcWWchH
2 IL_4IOA_0904IOA0.64120Major groove platform (H)X LSU rRNAC2486G2487*U2559G2560G2561cWWcWWchH
3 IL_4A1B_1114A1B0.64590126S RRNAC2864G2865*U2937G2938G2939cWWcWW
4 IL_2QBG_0922QBG0.64320B23S rRNAU2493G2494*U2457G2458A2459cWWcWW
5 IL_2QBG_0492QBG0.48471B23S rRNAA1603C1604*G1310G1311U1313ntHScWWcWW
6 IL_1F7Y_0011F7Y0.39231B16S RIBOSOMAL RNA FRAGMENTG18A19*U50G51C53tHScWWcWWncSH
7 IL_1FJG_0271FJG0.37501Major groove platform; stack outside cWW (H)A SSU rRNAG654A655*U751G752C754tHScWWcWWncSH
8 IL_2AW7_0342AW70.38291A16S ribosomal RNAG654A655*U751G752C754tHScWWcWW
9 IL_1G1X_0011G1X0.39181Major groove platform; stack outside cWWD+E16S RIBOSOMAL RNAG654A655*U751G752C754tHScWWcWWncSH
10 IL_4A1B_0804A1B0.46221126S RRNAU2331C2332*G1922G1923A1925tHScWWcWW
11 IL_3U5H_0843U5H0.44481525S rRNAU2336C2337*G1898G1899A1901tHScWWcWW
12 IL_3V2F_0633V2F0.44741A23S Ribosomal RNAU1993C1994*G1666G1667A1669tHScWWcWW
13 IL_2QBG_0642QBG0.45161B23S rRNAU1993C1994*G1666G1667A1669tHScWWcWW
14 IL_1S72_0611S720.408810 LSU rRNAU2034C2035*G1744G1745A1747tHScWWcWW
15 IL_1FJG_0241FJG0.26190Major groove platform (H)A SSU rRNAG644C645*G594G595C596ntHScWWcWWncSH
16 IL_1QA6_0021QA60.34991C58 NUCLEOTIDE RIBOSOMAL RNA DOMAINU151C152*G137A139A140ntHScWWcWWcSH
17 IL_3DIR_0043DIR0.29341ARNA (174-MER)G54G55*C38A39C41cWWcWW
18 IL_2QBG_0442QBG0.33171B23S rRNAU1101C1102*G1087A1089A1090cWWcWWncSH
19 IL_3P49_0073P490.41810AGlycine riboswitchG38A39*U49U50C51ncWWcWWncSH
20 IL_4A1B_1084A1B0.49310126S RRNAU2850G2851*U2814U2815G2816cWWcWW
21 IL_3P49_0103P490.37500AGlycine riboswitchG113G114*C140U141C142cWWcWWncSH
22 IL_2QBG_0252QBG0.31660B23S rRNAG757C758*G738A739C740cWWcWWcSH
23 IL_3OWZ_0073OWZ0.20050BDomain II of glycine riboswitchG35G36*C68U69C70cWWcWWcSH
24 IL_3OWZ_0033OWZ0.20950ADomain II of glycine riboswitchG35G36*C68U69C70cWWcWWcSH
25 IL_3D0U_0043D0U0.17751Major groove platform; stack outside cWWALysine Riboswitch RNAG51G52*C35A36C38cWWcWWcSH
26 IL_2QBG_0912QBG0.12700B23S rRNAG2454G2455*C2496A2497C2498cWWcWWcSH
27 IL_3V2F_0893V2F0.08750A23S Ribosomal RNAG2454G2455*C2496A2497C2498cWWcWWcSH
28 IL_1S72_0801S720.11110Major groove platform (H)0 LSU rRNAG2489A2490*U2531A2532C2533cWWcWWcSH
29 IL_4IOA_0864IOA0.00000Major groove platform (H)X LSU rRNAG2433G2434*C2475A2476C2477cWWcWWncSH
30 IL_1S03_0081S030.17510Major groove platformB47-MERU16G17*C34A35A36tHScWWcWWcSH
31 IL_4IOA_0734IOA0.30100Major groove platform (H)X LSU rRNAC2596G2597*C2033A2034G2035cWWcWWcSH
32 IL_3V2F_0753V2F0.29670A23S Ribosomal RNAC2617G2618*C2050A2051G2052cWWcWWcSH
33 IL_2QBG_0782QBG0.25740B23S rRNAU2617G2618*C2050A2051A2052tHScWWcWWcSH
34 IL_4IOA_0874IOA0.30210X LSU rRNAU2472G2473*U2436G2437A2438ntHScWWcWW
35 IL_3V2F_0903V2F0.30460A23S Ribosomal RNAU2493G2494*U2457G2458A2459ntHScWWncWW
36 IL_4A1B_0214A1B0.37680126S RRNAU473G474*U503A504A505cWWncWWncSH
37 IL_1I6U_0031I6U0.29750D16S RRNA FRAGMENTU28G29*U9A10A11ntHScWWcWWcSH
38 IL_2AW7_0312AW70.28490A16S ribosomal RNAU644G645*U594A595A596cWWcWWncSH
39 IL_3V2F_0093V2F0.26240A23S Ribosomal RNAG272|||DG272|||E*U363|||EA363|||FC364cWWcWWncSH
40 IL_4IOA_0844IOA0.23310Major groove platformX LSU rRNAG2393G2394*U2380A2381C2382cWWcWW
41 IL_1XJR_0021XJR0.25330Major groove platformAs2m RNAG13G14*U37A38C39cWWcWWcSH
42 IL_3V2F_0873V2F0.28630A23S Ribosomal RNAG2414G2415*U2401C2402C2403cWWcWWncSH
43 IL_3U5H_1083U5H0.31580525S rRNAG2823G2824*U2865U2866C2867cWWcWWncSHcSH
44 IL_4A1B_1064A1B0.30200126S RRNAG2811G2812*U2853C2854C2855cWWcWWncSH
45 IL_3SUX_0023SUX0.52400Major groove platformX THF riboswitchG37A38*U47G48U49cWWncWW
46 IL_1FJG_0281FJG0.28700Major groove platform (H)A SSU rRNAG657G658*C747C748C749cWWcWWncSH
47 IL_1G1X_0021G1X0.25750Major groove platformD+E16S RIBOSOMAL RNAG657G658*C747C748C749cWWcWWncSH
48 IL_3NKB_0023NKB0.24350Major groove platformBThe hepatitis delta virus ribozymeU47C48*G55U56A57cWWcWWcSH
49 IL_4BPP_0774BPP0.28590A18S RRNAU1469C1470*G1479U1480A1481cWWcWWncSH
50 IL_3Q1Q_0013Q1Q0.45440BRNase P RNAG328C329*G51U52C53cWWcWWncSH
51 IL_3V2F_0973V2F0.59670A23S Ribosomal RNAC2591G2592*C2601A2602G2603cWWcWW
52 IL_4A1B_0874A1B0.58781126S RRNAU2195G2196*U2236A2237A2239cWWcWW
53 IL_2QBG_0012QBG0.54040A5S rRNAC17G18*U65A66G67cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GA*UGAC4
UC*GGAA4
CG*UGG3
GG*CUC3
GG*CAC3
UG*UAA3
GG*UAC3
UG*UGA2
UC*GAAA2
GG*CAUC2
UG*CAA2
CG*CAG2
GG*CCC2
UC*GUA2
AC*GGUU1
GGAA*UC1
GC*GGC1
GA*UUC1
UG*UUG1
GC*GAC1
GA*UAC1
CAG*CG1
UGA*UG1
UCC*GG1
GG*UUC1
GG*UCC1
GA*UGU1
GC*GUC1
UG*UAAA1
CG*UAG1
Non-Watson-Crick part of the motif
SequenceCounts
*A16
*U9
*GA8
*G7
*AA3
*C3
*AU2
*GU1
GA*1
A*1
G*1
C*1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_39199.4Only in the parent motif
IL_39199.3
Compare
IL_3V2F_090, IL_3P49_010, IL_3V2F_087, IL_1FJG_028, IL_4IOA_084, IL_1FJG_027, IL_3V2F_089, IL_3V2F_009, IL_1S72_080, IL_4IOA_073, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_3P49_007, IL_4A1B_087, IL_4A1B_080, IL_1FJG_024, IL_2QBG_091, IL_1XJR_002, IL_4IOA_087, IL_2QBG_092, IL_2QBG_095, IL_3V2F_097, IL_4IOA_086, IL_3V2F_075, IL_4A1B_021, IL_1I6U_003, IL_4A1B_108, IL_4A1B_106, IL_3DIR_004, IL_2QBG_078, IL_1QA6_002, IL_3V2F_063, IL_1S03_008, IL_3Q1Q_001, IL_1F7Y_001, IL_3OWZ_007, IL_4A1B_111, IL_3OWZ_003, IL_4IOA_090, IL_3SUX_002IL_4BPP_077IL_2XZM_055, IL_2XZM_079

Children motifs

Child motifCommon motif instancesOnly in IL_39199.4Only in the child motif
IL_39199.5
Compare
IL_2QBG_091, IL_3P49_010, IL_1FJG_028, IL_4IOA_084, IL_1FJG_027, IL_1FJG_024, IL_1S72_080, IL_4IOA_073, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_3P49_007, IL_4A1B_087, IL_4A1B_080, IL_4BPP_077, IL_1XJR_002, IL_4IOA_087, IL_2QBG_092, IL_2QBG_095, IL_4IOA_086, IL_3Q1Q_001, IL_4A1B_021, IL_1I6U_003, IL_4A1B_108, IL_4A1B_106, IL_3DIR_004, IL_2QBG_078, IL_1QA6_002, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_4A1B_111, IL_3OWZ_003, IL_4IOA_090, IL_3SUX_002IL_3V2F_090, IL_3V2F_087, IL_3V2F_097, IL_3V2F_089, IL_3V2F_075, IL_3V2F_009, IL_3V2F_063IL_4NVV_008, IL_4NVV_086, IL_1VW3_062, IL_4NVV_088, IL_1VW3_048, IL_4NVV_078, IL_1VW3_073, IL_4NVV_066, IL_1VW3_074, IL_1VW3_075
Annotations
  • (38)
  • Major groove platform (H) (6)
  • Major groove platform (6)
  • Major groove platform; stack outside cWW (2)
  • Major groove platform; stack outside cWW (H) (1)
  • Basepair signature
    cWW-tHS-cSH-cWW
    Heat map statistics
    Min 0.06 | Avg 0.48 | Max 0.97
    Help

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