Motif IL_39521.6 Version IL_39521.6 of this group appears in releases 3.77 to 3.79

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_4V9F_022	4V9F	0.2427	0	tSH-tHW-tHS	0	LSU rRNA	C	719	G	720	A	721	G	722	G	723	*	C	705	G	706	C	707	A	708	G	709	cWW	tSH	tHW	tHS	cWW
2	IL_4V9F_055	4V9F	0.2194	0	tSH-tHW-tHS	0	LSU rRNA	U	1639	C	1640	A	1641	A	1642	C	1643	*	G	1542	G	1543	U	1544	C	1545	G	1546	cWW	tSH	tHW	tHS	cWW
3	IL_4V88_418	4V88	0.1725	0	tSH-tHW-tHS	A6	SSU rRNA	U	968	C	969	A	970	A	971	G	972	*	C	627	G	628	U	629	A	630	G	631	cWW	tSH	tHW	tHS	cWW
4	IL_4V88_436	4V88	0.1651	0	tSH-tHW-tHS	A6	SSU rRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW	tSH	tHW	tHS	cWW
5	IL_5J7L_037	5J7L	0.1741	0	tSH-tHW-tHS	AA	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
6	IL_4LFB_033	4LFB	0.1731	0	tSH-tHW-tHS	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
7	IL_6CZR_145	6CZR	0.1774	0	tSH-tHW-tHS	1a	SSU rRNA	C	763	A	764	A	765	A	766	C	767	*	G	783	G	784	U	785	A	786	G	787	cWW	tSH	tHW	tHS	cWW
8	IL_6CZR_135	6CZR	0.0000	0	tSH-tHW-tHS	1a	SSU rRNA	U	741	G	742	A	743	G	744	G	745	*	U	564	G	565	U	566	A	567	G	568	cWW	tSH	tHW	ntHS	cWW
9	IL_4LFB_023	4LFB	0.1276	0	tSH-tHW-tHS	A	SSU rRNA	U	757	G	758	A	759	G	760	G	761	*	U	580	G	581	U	582	A	583	G	584	cWW	tSH	tHW	tHS	cWW
10	IL_5J7L_027	5J7L	0.1832	0	tSH-tHW-tHS	AA	SSU rRNA	U	757	C	758	A	759	G	760	G	761	*	C	580	G	581	C	582	A	583	G	584	cWW	tSH	tHW	tHS	cWW
11	IL_4WF9_052	4WF9	0.2140	0	tSH-tHW-tHS	X	LSU rRNA	U	1394	G	1395	A	1396	G	1397	G	1398	*	C	1407	G	1408	U	1409	A	1410	G	1411	cWW		ntHW	ntHS	cWW
12	IL_5J7L_293	5J7L	0.2596	0	tSH-tHW-tHS	DA	LSU rRNA	C	1357	G	1358	A	1359	G	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH	tHW	tHS	cWW
13	IL_7A0S_049	7A0S	0.2649	0	tSH-tHW-tHS	X	LSU rRNA	U	1370	G	1371	A	1372	G	1373	G	1374	*	C	1383	G	1384	C	1385	A	1386	G	1387	cWW	tSH	tHW	tHS	cWW
14	IL_7RQB_053	7RQB	0.2961	0	tSH-tHW-tHS	1A	LSU rRNA	U	1357	G	1358	A	1359	A	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH	ntWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAAC*GGUAG	3
UGAGG*UGUAG	2
CGAGG*CGCAG	1
UCAAC*GGUCG	1
UCAAG*CGUAG	1
CGAAG*CGUAG	1
UCAGG*CGCAG	1
UGAGG*CGUAG	1
CGAGG*CGUAG	1
UGAGG*CGCAG	1
UGAAG*CGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAG*GUA	4
AAA*GUA	3
GAG*GCA	2
GAA*GUA	2
CAA*GUC	1
CAA*GUA	1
CAG*GCA	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tSH-tHW-tHS (14)
Basepair signature: cWW-tSH-tHW-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.21 | Max 0.38

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.5768 s