RNA 3D Hub //

Motif IL_39521.6 Version IL_39521.6 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-6
1 IL_4V9F_0224V9F0.24270tSH-tHW-tHS0 LSU rRNAC719G720A721G722G723*C705G706C707A708G709cWWtSHtHWtHScWW
2 IL_4V9F_0554V9F0.21940tSH-tHW-tHS0 LSU rRNAU1639C1640A1641A1642C1643*G1542G1543U1544C1545G1546cWWtSHtHWtHScWW
3 IL_4V88_4184V880.17250tSH-tHW-tHSA6 SSU rRNAU968C969A970A971G972*C627G628U629A630G631cWWtSHtHWtHScWW
4 IL_4V88_4364V880.16510tSH-tHW-tHSA6 SSU rRNAC990G991A992A993G994*C1010G1011U1012A1013G1014cWWtSHtHWtHScWW
5 IL_5J7L_0375J7L0.17410tSH-tHW-tHSAA SSU rRNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
6 IL_4LFB_0334LFB0.17310tSH-tHW-tHSA SSU rRNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
7 IL_6CZR_1456CZR0.17740tSH-tHW-tHS1a SSU rRNAC763A764A765A766C767*G783G784U785A786G787cWWtSHtHWtHScWW
8 IL_6CZR_1356CZR0.00000tSH-tHW-tHS1a SSU rRNAU741G742A743G744G745*U564G565U566A567G568cWWtSHtHWntHScWW
9 IL_4LFB_0234LFB0.12760tSH-tHW-tHSA SSU rRNAU757G758A759G760G761*U580G581U582A583G584cWWtSHtHWtHScWW
10 IL_5J7L_0275J7L0.18320tSH-tHW-tHSAA SSU rRNAU757C758A759G760G761*C580G581C582A583G584cWWtSHtHWtHScWW
11 IL_4WF9_0524WF90.21400tSH-tHW-tHSX LSU rRNAU1394G1395A1396G1397G1398*C1407G1408U1409A1410G1411cWWntHWntHScWW
12 IL_5J7L_2935J7L0.25960tSH-tHW-tHSDA LSU rRNAC1357G1358A1359G1360G1361*C1370G1371U1372A1373G1374cWWtSHtHWtHScWW
13 IL_7A0S_0497A0S0.26490tSH-tHW-tHSX LSU rRNAU1370G1371A1372G1373G1374*C1383G1384C1385A1386G1387cWWtSHtHWtHScWW
14 IL_7RQB_0537RQB0.29610tSH-tHW-tHS1A LSU rRNAU1357G1358A1359A1360G1361*C1370G1371U1372A1373G1374cWWtSHntWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAAC*GGUAG3
UGAGG*UGUAG2
CGAGG*CGCAG1
UCAAC*GGUCG1
UCAAG*CGUAG1
CGAAG*CGUAG1
UCAGG*CGCAG1
UGAGG*CGUAG1
CGAGG*CGUAG1
UGAGG*CGCAG1
UGAAG*CGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAG*GUA4
AAA*GUA3
GAG*GCA2
GAA*GUA2
CAA*GUC1
CAA*GUA1
CAG*GCA1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tHW-tHS (14)
    • Basepair signature
    cWW-tSH-tHW-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.21 | Max 0.38
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    Coloring options:

    IL_4V9F_022:IL_4V9F_022 = 0IL_4V9F_022:IL_4V9F_055 = 0.2797IL_4V9F_022:IL_4V88_418 = 0.3265IL_4V9F_022:IL_4V88_436 = 0.2549IL_4V9F_022:IL_5J7L_037 = 0.2841IL_4V9F_022:IL_4LFB_033 = 0.2761IL_4V9F_022:IL_6CZR_145 = 0.2684IL_4V9F_022:IL_6CZR_135 = 0.2427IL_4V9F_022:IL_4LFB_023 = 0.2397IL_4V9F_022:IL_5J7L_027 = 0.2247IL_4V9F_022:IL_4WF9_052 = 0.2795IL_4V9F_022:IL_5J7L_293 = 0.2971IL_4V9F_022:IL_7A0S_049 = 0.2649IL_4V9F_022:IL_7RQB_053 = 0.36IL_4V9F_055:IL_4V9F_022 = 0.2797IL_4V9F_055:IL_4V9F_055 = 0IL_4V9F_055:IL_4V88_418 = 0.2262IL_4V9F_055:IL_4V88_436 = 0.2292IL_4V9F_055:IL_5J7L_037 = 0.2289IL_4V9F_055:IL_4LFB_033 = 0.2363IL_4V9F_055:IL_6CZR_145 = 0.2511IL_4V9F_055:IL_6CZR_135 = 0.2194IL_4V9F_055:IL_4LFB_023 = 0.231IL_4V9F_055:IL_5J7L_027 = 0.2759IL_4V9F_055:IL_4WF9_052 = 0.3172IL_4V9F_055:IL_5J7L_293 = 0.3803IL_4V9F_055:IL_7A0S_049 = 0.3843IL_4V9F_055:IL_7RQB_053 = 0.3783IL_4V88_418:IL_4V9F_022 = 0.3265IL_4V88_418:IL_4V9F_055 = 0.2262IL_4V88_418:IL_4V88_418 = 0IL_4V88_418:IL_4V88_436 = 0.1562IL_4V88_418:IL_5J7L_037 = 0.1521IL_4V88_418:IL_4LFB_033 = 0.1358IL_4V88_418:IL_6CZR_145 = 0.1759IL_4V88_418:IL_6CZR_135 = 0.1725IL_4V88_418:IL_4LFB_023 = 0.1774IL_4V88_418:IL_5J7L_027 = 0.1956IL_4V88_418:IL_4WF9_052 = 0.2249IL_4V88_418:IL_5J7L_293 = 0.259IL_4V88_418:IL_7A0S_049 = 0.2995IL_4V88_418:IL_7RQB_053 = 0.2546IL_4V88_436:IL_4V9F_022 = 0.2549IL_4V88_436:IL_4V9F_055 = 0.2292IL_4V88_436:IL_4V88_418 = 0.1562IL_4V88_436:IL_4V88_436 = 0IL_4V88_436:IL_5J7L_037 = 0.1099IL_4V88_436:IL_4LFB_033 = 0.1175IL_4V88_436:IL_6CZR_145 = 0.1606IL_4V88_436:IL_6CZR_135 = 0.1651IL_4V88_436:IL_4LFB_023 = 0.1723IL_4V88_436:IL_5J7L_027 = 0.2049IL_4V88_436:IL_4WF9_052 = 0.2239IL_4V88_436:IL_5J7L_293 = 0.226IL_4V88_436:IL_7A0S_049 = 0.2893IL_4V88_436:IL_7RQB_053 = 0.2778IL_5J7L_037:IL_4V9F_022 = 0.2841IL_5J7L_037:IL_4V9F_055 = 0.2289IL_5J7L_037:IL_4V88_418 = 0.1521IL_5J7L_037:IL_4V88_436 = 0.1099IL_5J7L_037:IL_5J7L_037 = 0IL_5J7L_037:IL_4LFB_033 = 0.0744IL_5J7L_037:IL_6CZR_145 = 0.1106IL_5J7L_037:IL_6CZR_135 = 0.1741IL_5J7L_037:IL_4LFB_023 = 0.1715IL_5J7L_037:IL_5J7L_027 = 0.2076IL_5J7L_037:IL_4WF9_052 = 0.2393IL_5J7L_037:IL_5J7L_293 = 0.245IL_5J7L_037:IL_7A0S_049 = 0.2982IL_5J7L_037:IL_7RQB_053 = 0.2893IL_4LFB_033:IL_4V9F_022 = 0.2761IL_4LFB_033:IL_4V9F_055 = 0.2363IL_4LFB_033:IL_4V88_418 = 0.1358IL_4LFB_033:IL_4V88_436 = 0.1175IL_4LFB_033:IL_5J7L_037 = 0.0744IL_4LFB_033:IL_4LFB_033 = 0IL_4LFB_033:IL_6CZR_145 = 0.1128IL_4LFB_033:IL_6CZR_135 = 0.1731IL_4LFB_033:IL_4LFB_023 = 0.1703IL_4LFB_033:IL_5J7L_027 = 0.1916IL_4LFB_033:IL_4WF9_052 = 0.1949IL_4LFB_033:IL_5J7L_293 = 0.2011IL_4LFB_033:IL_7A0S_049 = 0.2659IL_4LFB_033:IL_7RQB_053 = 0.2716IL_6CZR_145:IL_4V9F_022 = 0.2684IL_6CZR_145:IL_4V9F_055 = 0.2511IL_6CZR_145:IL_4V88_418 = 0.1759IL_6CZR_145:IL_4V88_436 = 0.1606IL_6CZR_145:IL_5J7L_037 = 0.1106IL_6CZR_145:IL_4LFB_033 = 0.1128IL_6CZR_145:IL_6CZR_145 = 0IL_6CZR_145:IL_6CZR_135 = 0.1774IL_6CZR_145:IL_4LFB_023 = 0.1823IL_6CZR_145:IL_5J7L_027 = 0.2027IL_6CZR_145:IL_4WF9_052 = 0.225IL_6CZR_145:IL_5J7L_293 = 0.2341IL_6CZR_145:IL_7A0S_049 = 0.2487IL_6CZR_145:IL_7RQB_053 = 0.2861IL_6CZR_135:IL_4V9F_022 = 0.2427IL_6CZR_135:IL_4V9F_055 = 0.2194IL_6CZR_135:IL_4V88_418 = 0.1725IL_6CZR_135:IL_4V88_436 = 0.1651IL_6CZR_135:IL_5J7L_037 = 0.1741IL_6CZR_135:IL_4LFB_033 = 0.1731IL_6CZR_135:IL_6CZR_145 = 0.1774IL_6CZR_135:IL_6CZR_135 = 0IL_6CZR_135:IL_4LFB_023 = 0.1276IL_6CZR_135:IL_5J7L_027 = 0.1832IL_6CZR_135:IL_4WF9_052 = 0.214IL_6CZR_135:IL_5J7L_293 = 0.2596IL_6CZR_135:IL_7A0S_049 = 0.2649IL_6CZR_135:IL_7RQB_053 = 0.2961IL_4LFB_023:IL_4V9F_022 = 0.2397IL_4LFB_023:IL_4V9F_055 = 0.231IL_4LFB_023:IL_4V88_418 = 0.1774IL_4LFB_023:IL_4V88_436 = 0.1723IL_4LFB_023:IL_5J7L_037 = 0.1715IL_4LFB_023:IL_4LFB_033 = 0.1703IL_4LFB_023:IL_6CZR_145 = 0.1823IL_4LFB_023:IL_6CZR_135 = 0.1276IL_4LFB_023:IL_4LFB_023 = 0IL_4LFB_023:IL_5J7L_027 = 0.1449IL_4LFB_023:IL_4WF9_052 = 0.2384IL_4LFB_023:IL_5J7L_293 = 0.247IL_4LFB_023:IL_7A0S_049 = 0.2883IL_4LFB_023:IL_7RQB_053 = 0.3128IL_5J7L_027:IL_4V9F_022 = 0.2247IL_5J7L_027:IL_4V9F_055 = 0.2759IL_5J7L_027:IL_4V88_418 = 0.1956IL_5J7L_027:IL_4V88_436 = 0.2049IL_5J7L_027:IL_5J7L_037 = 0.2076IL_5J7L_027:IL_4LFB_033 = 0.1916IL_5J7L_027:IL_6CZR_145 = 0.2027IL_5J7L_027:IL_6CZR_135 = 0.1832IL_5J7L_027:IL_4LFB_023 = 0.1449IL_5J7L_027:IL_5J7L_027 = 0IL_5J7L_027:IL_4WF9_052 = 0.2245IL_5J7L_027:IL_5J7L_293 = 0.2343IL_5J7L_027:IL_7A0S_049 = 0.2243IL_5J7L_027:IL_7RQB_053 = 0.253IL_4WF9_052:IL_4V9F_022 = 0.2795IL_4WF9_052:IL_4V9F_055 = 0.3172IL_4WF9_052:IL_4V88_418 = 0.2249IL_4WF9_052:IL_4V88_436 = 0.2239IL_4WF9_052:IL_5J7L_037 = 0.2393IL_4WF9_052:IL_4LFB_033 = 0.1949IL_4WF9_052:IL_6CZR_145 = 0.225IL_4WF9_052:IL_6CZR_135 = 0.214IL_4WF9_052:IL_4LFB_023 = 0.2384IL_4WF9_052:IL_5J7L_027 = 0.2245IL_4WF9_052:IL_4WF9_052 = 0IL_4WF9_052:IL_5J7L_293 = 0.1529IL_4WF9_052:IL_7A0S_049 = 0.237IL_4WF9_052:IL_7RQB_053 = 0.2764IL_5J7L_293:IL_4V9F_022 = 0.2971IL_5J7L_293:IL_4V9F_055 = 0.3803IL_5J7L_293:IL_4V88_418 = 0.259IL_5J7L_293:IL_4V88_436 = 0.226IL_5J7L_293:IL_5J7L_037 = 0.245IL_5J7L_293:IL_4LFB_033 = 0.2011IL_5J7L_293:IL_6CZR_145 = 0.2341IL_5J7L_293:IL_6CZR_135 = 0.2596IL_5J7L_293:IL_4LFB_023 = 0.247IL_5J7L_293:IL_5J7L_027 = 0.2343IL_5J7L_293:IL_4WF9_052 = 0.1529IL_5J7L_293:IL_5J7L_293 = 0IL_5J7L_293:IL_7A0S_049 = 0.2441IL_5J7L_293:IL_7RQB_053 = 0.3127IL_7A0S_049:IL_4V9F_022 = 0.2649IL_7A0S_049:IL_4V9F_055 = 0.3843IL_7A0S_049:IL_4V88_418 = 0.2995IL_7A0S_049:IL_4V88_436 = 0.2893IL_7A0S_049:IL_5J7L_037 = 0.2982IL_7A0S_049:IL_4LFB_033 = 0.2659IL_7A0S_049:IL_6CZR_145 = 0.2487IL_7A0S_049:IL_6CZR_135 = 0.2649IL_7A0S_049:IL_4LFB_023 = 0.2883IL_7A0S_049:IL_5J7L_027 = 0.2243IL_7A0S_049:IL_4WF9_052 = 0.237IL_7A0S_049:IL_5J7L_293 = 0.2441IL_7A0S_049:IL_7A0S_049 = 0IL_7A0S_049:IL_7RQB_053 = 0.2651IL_7RQB_053:IL_4V9F_022 = 0.36IL_7RQB_053:IL_4V9F_055 = 0.3783IL_7RQB_053:IL_4V88_418 = 0.2546IL_7RQB_053:IL_4V88_436 = 0.2778IL_7RQB_053:IL_5J7L_037 = 0.2893IL_7RQB_053:IL_4LFB_033 = 0.2716IL_7RQB_053:IL_6CZR_145 = 0.2861IL_7RQB_053:IL_6CZR_135 = 0.2961IL_7RQB_053:IL_4LFB_023 = 0.3128IL_7RQB_053:IL_5J7L_027 = 0.253IL_7RQB_053:IL_4WF9_052 = 0.2764IL_7RQB_053:IL_5J7L_293 = 0.3127IL_7RQB_053:IL_7A0S_049 = 0.2651IL_7RQB_053:IL_7RQB_053 = 0IL_4V9F_022IL_4V9F_055IL_4V88_418IL_4V88_436IL_5J7L_037IL_4LFB_033IL_6CZR_145IL_6CZR_135IL_4LFB_023IL_5J7L_027IL_4WF9_052IL_5J7L_293IL_7A0S_049IL_7RQB_053Discrepancy0.000.100.200.30
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