RNA 3D Hub //

Motif IL_42589.2 Version IL_42589.2 of this group appears in releases 3.19 to 3.24

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_3NJ7_0033NJ70.65850Isolated near basepairC+DRNA (10-mer)C3A4G5*C6A7G8cWWcWW
2 IL_3NJ7_0043NJ70.65220Isolated near basepairD+CRNA (10-mer)C3A4G5*C6A7G8cWWcWW
3 IL_2ZI0_0012ZI00.73190Isolated near basepairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
4 IL_2ZI0_0022ZI00.73190Isolated near basepairD+CRNA (21-mer)U9||||2_545U10||||2_545A11||||2_545*U9||||2_545U10||||2_545A11||||2_545cWWcWW
5 IL_4IOA_0294IOA0.60430Isolated near basepair (H)X LSU rRNAA883C884A885*U917A918U919cWWcWW
6 IL_2D6F_0012D6F0.56820Self complementaryFtRNAC927U928G929*C941G942G943cWWncWWcWW
7 IL_4WF9_0414WF90.62981Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
8 IL_364D_004364D0.67740Self complementaryB+CRNA (19-mer) + RNA (31-mer)G79U80G81*U95G96C97cWWncWWcWW
9 IL_406D_002406D0.34670Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
10 IL_4KQ0_0014KQ00.15210Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
11 IL_4KQ0_0054KQ00.15140Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
12 IL_6IA2_0036IA20.16480Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
13 IL_3R1D_0023R1D0.18630Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
14 IL_4E5C_0014E5C0.15950Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
15 IL_3R1C_0313R1C0.14390Isolated cWH basepairF+ERNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
16 IL_3R1C_0173R1C0.12550Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
17 IL_3SJ2_0023SJ20.11450Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
18 IL_3R1C_0113R1C0.11160Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
19 IL_3R1C_0123R1C0.11360Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
20 IL_3R1C_0183R1C0.11810Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
21 IL_3SJ2_0033SJ20.10400Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
22 IL_3SJ2_0013SJ20.11300Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
23 IL_4KQ0_0034KQ00.14100Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
24 IL_3R1C_0323R1C0.12140Isolated cWH basepairF+ERNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
25 IL_3CZW_0023CZW0.00000Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
26 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
27 IL_4KQ0_0024KQ00.12920Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
28 IL_4KQ0_0044KQ00.12940Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
29 IL_6RA4_0026RA40.15350Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
30 IL_4V88_4274V880.26020Isolated cWH basepairA6 SSU rRNAU822G823G824*C848C849A850cWWncHWcWW
31 IL_4V88_4534V880.24190Isolated cWH basepairA6 SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
32 IL_4WF9_0454WF90.23660Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
33 IL_5J7L_0115J7L0.22910Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
34 IL_3D0M_0013D0M0.17790Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
35 IL_3D0M_0023D0M0.17790Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
36 IL_6F4H_0016F4H0.34450Isolated cWH basepairDU1-SL2G1G2C3*G20C21C22cWWncHWcWW
37 IL_5F5F_0035F5F0.32860Isolated cWH basepairFRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
38 IL_5F5F_0015F5F0.34090Isolated cWH basepairBRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
39 IL_3W3S_0033W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
40 IL_3W3S_0063W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAG47|||A|43_455G47|||B|43_455U47|||C|43_455*A47|||N|43_455G47|||O|43_455C47|||P|43_455cWWcHWcWW
41 IL_4V88_4054V880.33310Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
42 IL_2W2H_0022W2H0.38800Isolated cWH basepairRRNA (21-mer)G17U18C19*G8A9U10ncWWncWWcWW
43 IL_4LCK_0094LCK0.44388FT-BOX RIBOSWITCH STEM IU37G38C47*G69G70A71cWWcHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG17
UGA*UGA5
CAG*CAG2
UUA*UUA2
CGC*GGG2
UGC*GGA2
GGU*AGC2
ACA*UAU1
CUG*CGG1
GAUG*CGC1
GUG*UGC1
UGG*UGG1
UGG*CCA1
UGG*CGA1
GGC*GCC1
GGA*UAC1
GUC*GAU1
UGAUUAGCGAC*GGA1
Non-Watson-Crick part of the motif
SequenceCounts
G*G30
A*A2
U*U2
U*G2
G*C2
C*A1
AU*G1
G*A1
U*A1
GAUUAGCGA*G1

Release history

Release3.193.203.213.223.233.24
Date2019-05-312019-06-282019-07-262019-08-232019-09-192019-10-16
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (34)
  • Isolated near basepair (4)
  • Self complementary (2)
  • Isolated near basepair (H) (1)
  • (1)
  • Isolated non-canonical cWW pair (1)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.40 | Max 0.92
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 1.7773 s