RNA 3D Hub //

Motif IL_42589.3 Version IL_42589.3 of this group appears in releases 3.25 to 3.45

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_3NJ7_0033NJ70.65850Isolated near basepairC+DRNA (10-mer)C3A4G5*C6A7G8cWWcWW
2 IL_3NJ7_0043NJ70.65220Isolated near basepairD+CRNA (10-mer)C3A4G5*C6A7G8cWWcWW
3 IL_2ZI0_0012ZI00.73190Isolated near basepairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
4 IL_2ZI0_0022ZI00.73190Isolated near basepairD+CRNA (21-mer)U9||||2_545U10||||2_545A11||||2_545*U9||||2_545U10||||2_545A11||||2_545cWWcWW
5 IL_4IOA_0294IOA0.60430Isolated near basepair (H)X LSU rRNAA883C884A885*U917A918U919cWWcWW
6 IL_2D6F_0012D6F0.56820Self complementaryFtRNAC927U928G929*C941G942G943cWWncWWcWW
7 IL_4WF9_0414WF90.62981Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
8 IL_364D_004364D0.67740Self complementaryB+CRNA (19-mer) + RNA (31-mer)G79U80G81*U95G96C97cWWncWWcWW
9 IL_406D_002406D0.34670Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
10 IL_4KQ0_0014KQ00.15210Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
11 IL_4KQ0_0054KQ00.15140Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
12 IL_6IA2_0036IA20.16480Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
13 IL_3R1D_0023R1D0.18630Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
14 IL_4E5C_0014E5C0.15950Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
15 IL_3R1C_0313R1C0.14390Isolated cWH basepairF+ERNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
16 IL_3R1C_0173R1C0.12550Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
17 IL_3SJ2_0023SJ20.11450Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
18 IL_3R1C_0113R1C0.11160Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
19 IL_3R1C_0123R1C0.11360Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
20 IL_3R1C_0183R1C0.11810Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
21 IL_3SJ2_0033SJ20.10400Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
22 IL_3SJ2_0013SJ20.11300Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
23 IL_4KQ0_0034KQ00.14100Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
24 IL_3R1C_0323R1C0.12140Isolated cWH basepairF+ERNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
25 IL_3CZW_0023CZW0.00000Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
26 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
27 IL_4KQ0_0024KQ00.12920Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
28 IL_4KQ0_0044KQ00.12940Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
29 IL_6RA4_0026RA40.15350Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
30 IL_4V88_4274V880.26020Isolated cWH basepairA6 SSU rRNAU822G823G824*C848C849A850cWWncHWcWW
31 IL_4V88_4534V880.24190Isolated cWH basepairA6 SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
32 IL_4WF9_0454WF90.23660Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
33 IL_5J7L_0115J7L0.22910Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
34 IL_3D0M_0013D0M0.17790Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
35 IL_3D0M_0023D0M0.17790Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
36 IL_6F4H_0016F4H0.34450Isolated cWH basepairDU1-SL2G1G2C3*G20C21C22cWWncHWcWW
37 IL_1L9A_0071L9A0.41910Isolated cWH basepairBsignal recognition particle RNA S domainG187G188C189*G210U211C212cWWcWW
38 IL_5F5F_0035F5F0.32860Isolated cWH basepairFRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
39 IL_5F5F_0015F5F0.34090Isolated cWH basepairBRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
40 IL_3W3S_0033W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
41 IL_3W3S_0063W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAG47|||A|43_455G47|||B|43_455U47|||C|43_455*A47|||N|43_455G47|||O|43_455C47|||P|43_455cWWcHWcWW
42 IL_4V88_4054V880.33310Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
43 IL_2W2H_0022W2H0.38800Isolated cWH basepairRRNA (21-mer)G17U18C19*G8A9U10ncWWncWWcWW
44 IL_4LCK_0094LCK0.44388FT-box leaderU37G38C47*G69G70A71cWWcHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG17
UGA*UGA5
CAG*CAG2
UUA*UUA2
CGC*GGG2
UGC*GGA2
GGU*AGC2
ACA*UAU1
CUG*CGG1
GAUG*CGC1
GUG*UGC1
UGG*UGG1
UGG*CCA1
UGG*CGA1
GGC*GCC1
GGC*GUC1
GGA*UAC1
GUC*GAU1
UGAUUAGCGAC*GGA1
Non-Watson-Crick part of the motif
SequenceCounts
G*G30
A*A2
U*U2
U*G2
G*C2
C*A1
AU*G1
G*U1
G*A1
U*A1
GAUUAGCGA*G1

Release history

Release3.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.45
Date2019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-26
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (35)
  • Isolated near basepair (4)
  • Self complementary (2)
  • Isolated near basepair (H) (1)
  • (1)
  • Isolated non-canonical cWW pair (1)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.40 | Max 0.96
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.4885 s