RNA 3D Hub //

Motif IL_42589.4 Version IL_42589.4 of this group appears in releases 3.46 to 3.47

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_2ZI0_0012ZI00.71890Isolated near basepairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
2 IL_2ZI0_0022ZI00.71890Isolated near basepairD+CRNA (21-mer)U9||||2_545U10||||2_545A11||||2_545*U9||||2_545U10||||2_545A11||||2_545cWWcWW
3 IL_3NJ7_0033NJ70.59780Isolated near basepairD+CRNA (10-mer)C6A7G8*C3A4G5cWWcWW
4 IL_3NJ7_0043NJ70.59690Isolated near basepairC+DRNA (10-mer)C6A7G8*C3A4G5cWWcWW
5 IL_4IOA_0294IOA0.60210Isolated near basepair (H)X LSU rRNAA883C884A885*U917A918U919cWWcWW
6 IL_2D6F_0012D6F0.53400Self complementaryFtRNAC927U928G929*C941G942G943cWWncWWcWW
7 IL_4WF9_0414WF90.61721Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
8 IL_364D_004364D0.65280Self complementaryB+CRNA (19-mer) + RNA (31-mer)G79U80G81*U95G96C97cWWncWWcWW
9 IL_406D_002406D0.26970Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
10 IL_4V88_4274V880.26710Isolated cWH basepairA6 SSU rRNAU822G823G824*C848C849A850cWWncHWcWW
11 IL_4V88_4534V880.27450Isolated cWH basepairA6 SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
12 IL_4WF9_0454WF90.25350Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
13 IL_3CZW_0013CZW0.10400Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
14 IL_3CZW_0023CZW0.10400Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
15 IL_3R1C_0323R1C0.06370Isolated cWH basepairF+ERNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
16 IL_4KQ0_0034KQ00.08350Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
17 IL_3SJ2_0013SJ20.05930Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
18 IL_3SJ2_0033SJ20.00000Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
19 IL_3R1C_0183R1C0.05230Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
20 IL_3R1C_0123R1C0.05710Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
21 IL_3R1C_0113R1C0.05290Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
22 IL_3SJ2_0023SJ20.04760Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
23 IL_3R1C_0173R1C0.07090Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
24 IL_3R1C_0313R1C0.08490Isolated cWH basepairF+ERNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
25 IL_4E5C_0014E5C0.11680Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
26 IL_3R1D_0023R1D0.16480Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
27 IL_4KQ0_0014KQ00.13220Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
28 IL_4KQ0_0054KQ00.13200Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
29 IL_6IA2_0036IA20.18280Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
30 IL_4KQ0_0024KQ00.15490Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
31 IL_4KQ0_0044KQ00.15550Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
32 IL_6RA4_0026RA40.22180Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
33 IL_3D0M_0013D0M0.23850Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
34 IL_3D0M_0023D0M0.23850Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
35 IL_3W3S_0033W3S0.33680Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
36 IL_3W3S_0063W3S0.33680Isolated cWH basepairBSelenocysteine transfer RNAG47|||A|43_455G47|||B|43_455U47|||C|43_455*A47|||N|43_455G47|||O|43_455C47|||P|43_455cWWcHWcWW
37 IL_4V88_4054V880.38860Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
38 IL_2W2H_0022W2H0.45570Isolated cWH basepairRRNA (21-mer)G17U18C19*G8A9U10ncWWncWWcWW
39 IL_4J39_0014J390.62720Isolated non-canonical cWW pairBRNA (19-mer)G9||||4_555C10||||4_555C11||||4_555*G9C10C11cWWcWW
40 IL_6F4H_0016F4H0.80970Isolated cWH basepairDU1-SL2G20C21C22*G1G2C3cWWncWHcWW
41 IL_1L9A_0071L9A0.82230Isolated cWH basepairBsignal recognition particle RNA S domainG210U211C212*G187G188C189cWWcWW
42 IL_5F5F_0015F5F0.80690Isolated cWH basepairBRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
43 IL_5F5F_0035F5F0.80060Isolated cWH basepairFRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
44 IL_5J7L_0115J7L0.76690Isolated cWH basepairAA SSU rRNAG144G145G146*C176G177C178cWWcWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG17
UGA*UGA5
UUA*UUA2
CAG*CAG2
GGU*AGC2
GGA*UGC2
ACA*UAU1
CUG*CGG1
GAUG*CGC1
GUG*UGC1
UGG*UGG1
UGG*CCA1
UGG*CGA1
CGC*GGG1
GGA*UAC1
GUC*GAU1
GCC*GCC1
GCC*GGC1
GUC*GGC1
GGG*CGC1
Non-Watson-Crick part of the motif
SequenceCounts
G*G30
U*G3
U*U2
A*A2
C*A1
AU*G1
G*C1
G*A1
U*A1
C*C1
C*G1

Release history

Release3.463.47
Date2021-06-232021-07-21
StatusUpdated, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (35)
  • Isolated near basepair (4)
  • Self complementary (2)
  • Isolated non-canonical cWW pair (2)
  • Isolated near basepair (H) (1)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.47 | Max 0.94
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 4.3155 s