Motif IL_45592.1 Version IL_45592.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_023 | 4IOA | 0.7077 | 0 | X | LSU rRNA | U | 942 | U | 943 | A | 944 | * | U | 860 | G | 861 | cWW | cWW |
| 2 | IL_4CUX_051 | 4CUX | 0.0000 | 5 | 2 | 18S RRNA | C | 1034 | G | 1035 | A | 1036 | * | U | 1095 | G | 1101 | cWW | cWW |
| 3 | IL_3U5F_054 | 3U5F | 0.2570 | 5 | 6 | 18S rRNA | C | 1034 | G | 1035 | A | 1036 | * | U | 1095 | G | 1101 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGA*UCUUUGG | 2 |
| UUA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CUUUG | 2 |
| U* | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_45592.1 | Only in the parent motif |
|---|---|---|---|
| IL_31224.1 Compare | IL_3U5F_054 | IL_4IOA_023, IL_4CUX_051 | |
| IL_80348.3 Compare | IL_4IOA_023 | IL_4CUX_051, IL_3U5F_054 | IL_3U5F_020, IL_1FJG_012 |
Children motifs
| Child motif | Common motif instances | Only in IL_45592.1 | Only in the child motif |
|---|---|---|---|
| IL_45592.2 Compare | IL_4CUX_051, IL_3U5F_054 | IL_4IOA_023 | IL_3J7A_048 |
| IL_18271.1 Compare | IL_4IOA_023 | IL_4CUX_051, IL_3U5F_054 | IL_3TD1_002, IL_1MWL_003, IL_1MWL_002, IL_1DUH_001, IL_1DUH_005, IL_1O9M_002, IL_3TD1_005, IL_4IOA_102, IL_3J7A_015, IL_1FJG_057, IL_2O3X_002 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.26 | Avg 0.38 | Max 0.77
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