RNA 3D Hub //

Motif IL_47174.3 Version IL_47174.3 of this group appears in releases 0.9 to 0.9

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-32-53-4
1 IL_2ZJR_0632ZJR0.84024 X LSU rRNAC1973U1974U1976*A1686C1687G1691cWWcWW
2 IL_3V2F_0643V2F0.82584 A23S Ribosomal RNAC1990U1991U1993*A1669C1670G1674cWWcWW
3 IL_2QBG_0652QBG0.79624 B23S rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
4 IL_2QBG_0962QBG0.67942 B23S rRNAG2574C2575G2578*C2510U2511C2512cWWcWWcWW
5 IL_2ZJR_0902ZJR0.65892 X LSU rRNAG2553C2554G2557*C2489U2490C2491cWWncWWcWW
6 IL_3V2F_0943V2F0.65992 A23S Ribosomal RNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
7 IL_4A1B_1124A1B0.73942 126S RRNAG2931U2932G2935*C2867U2868C2869cWWcwWcWW
8 IL_3U5H_1143U5H0.71482 525S rRNAG2943U2944G2947*C2879U2880C2881cWWcwWcWW
9 IL_1S72_0951S720.69201 0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
10 IL_2ZJR_1002ZJR0.56131 X LSU rRNAG2852U2853C2855*G2813G2814C2815cWWcWWcWW
11 IL_3KTW_0023KTW0.64671Isolated non-canonical cWW with bulgesC SRP RNAA177U178C180*G152G153U154cWWncSHcWWncWW
12 IL_1U6B_0011U6B0.61051Isolated non-canonical cWW with bulgesB197-MERG19C20G22*C29A30C31cWWncWWcWW
13 IL_2QEK_0012QEK0.61371 A+BHIV-1 subtype F DIS genomic RNAG7A8G10*C15A16C17cWWcwWcWW
14 IL_4A1B_0614A1B0.59171 126S RRNAA1454U1456G1457*C1403G1404U1405cWWcSWcWW
15 IL_2ZJR_0362ZJR0.55461 X LSU rRNAG1042A1043G1045*C1132G1133C1134cWWcWWcWW
16 IL_4A1B_0274A1B0.51031 126S RRNAC577G578G580*C589A590G591cWWcWW
17 IL_4A1B_0244A1B0.50040 126S RRNAA610A611C612*G555A556U557cWWncwWcWW
18 IL_3NJ6_0023NJ60.55760 ARNA (10-mer)C6A7G8*C3||||6_555A4||||6_555G5||||6_555cWWcWW
19 IL_3NJ6_0013NJ60.55750 ARNA (10-mer)C6||||6_555A7||||6_555G8||||6_555*C3A4G5cWWcWW
20 IL_3NJ7_0023NJ70.53010 A+BRNA (10-mer)C6A7G8*C3A4G5cWWcWW
21 IL_2XZM_0122XZM0.49140 A18S RRNAU156G157G158*C144G145A146cWWcWW
22 IL_4A1C_0094A1C0.44331 35S RRNAC92G93C94*G82G83G85cWWcWW
23 IL_2QBG_0342QBG0.44960 B23S rRNAA905U906G907*U870U871U872cWWncWwcWW
24 IL_2XZM_0582XZM0.31890 A18S RRNAC1595C1596G1597*C1126A1127G1128cWWcWWacWW
25 IL_3U5F_0363U5F0.36720 618S rRNAC646G647G648*C686G687G688cWWcWW
26 IL_3U5F_0503U5F0.36470 618S rRNAU917U918A919*U893U894G895ncWWcWwcWW
27 IL_3FO4_0013FO40.23450 AGuanine riboswitch C74U mutantU25C26G27*C43A44A45cWWcWWacWW
28 IL_4E48_0054E480.28720 B+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
29 IL_3SZX_0033SZX0.22990UU cWWB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
30 IL_3SYW_0013SYW0.27390 A+BRNA (19-mer)C7U8G9*C13U14G15||AcWWcWwcWW
31 IL_3SYW_0033SYW0.27420 B+ARNA (19-mer)C7U8G9*C13U14G15||AcWWcWwcWW
32 IL_2ZJR_0302ZJR0.27420 X LSU rRNAG963A964G965*U974C975C976cWWcWWcWW
33 IL_3V2F_0343V2F0.25980 A23S Ribosomal RNAG952A953G954*U963C964C965cWWcWWcWW
34 IL_1ZEV_0021ZEV0.23520 A+BRNA (18-mer)C4||AU5||AG6||A*C13||AU14||AG15||AcWWcWW
35 IL_1ZEV_0051ZEV0.19780 A+BRNA (18-mer)C13||AU14||AG15||A*C4||AU5||AG6||AcWWncwWcWW
36 IL_1ZH5_0011ZH50.26730 C+DRNA (9-mer)C3U4G5*C3U4G5cWWncwWcWW
37 IL_1ZEV_0061ZEV0.25120 A+BRNA (18-mer)C16||AU17||AG18||A*C1||AU2||AG3||AcWWncWwcWW
38 IL_3SZX_0023SZX0.19580 A+BRNA (19-mer)C10U11G12*C10U11G12cWWncWwcWW
39 IL_1ZEV_0031ZEV0.26370 B+ARNA (18-mer)C10||AU11||AG12||A*C7||AU8||AG9||AcWWncwWcWW
40 IL_1ZEV_0041ZEV0.28370 A+BRNA (18-mer)C10||AU11||AG12||A*C7||AU8||AG9||AcWWncWwcWW
41 IL_4E48_0064E480.19670UU cWWA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
42 IL_1ZEV_0011ZEV0.25200 A+BRNA (18-mer)C1||AU2||AG3||A*C16||AU17||AG18||AncWWcWWcWwcWW
43 IL_1U6B_0051U6B0.30290 B197-MERC100U101U102*A117U118G119cWWcWwcWW
44 IL_2XZM_0012XZM0.28870 A18S RRNAU596U597A598*U21U22A23cWWcWwcWW
45 IL_4FNJ_0024FNJ0.23190 ARNA (35-MER)C4U5G6*C30U31G32cWWcWW
46 IL_4E48_0034E480.25800 B+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
47 IL_4E48_0014E480.24340 B+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
48 IL_4E48_0024E480.24180UU cWW water insertedA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
49 IL_4E48_0044E480.23130 A+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
50 IL_3SZX_0013SZX0.22130 B+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
51 IL_1UN6_0051UN60.19850UU cWWF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
52 IL_3GLP_0023GLP0.25690 A+BRNA (8-mer)C5U6G7*C2||AU3||AG4ncWwcWW
53 IL_1RPU_0011RPU0.24660 D+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
54 IL_2XZM_0602XZM0.31080 A18S RRNAC1145C1146U1147*G1435C1436G1437cWWncWBncWW
55 IL_2ZJR_0422ZJR0.39090 X LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
56 IL_2XZM_0722XZM0.37841 A18S RRNAC1311G1313C1314*G1353A1354G1355cWWncWWcWW
57 IL_3U5F_0723U5F0.32671 618S rRNAC1339A1341C1342*G1383A1384G1385cWWncwWcWW
58 IL_3SYW_0023SYW0.16420 B+ARNA (19-mer)C10U11G12*C10U11G12cWWncwWcWW
59 IL_157D_001157D0.00000 A+BRNA (12-mer)C3G4A5*U20A21G22cWWcWWcWW
60 IL_2Q1R_0022Q1R0.08450 ARNA (12-mer)C1003||||2_755G1004||||2_755A1005||||2_755*U1008A1009G1010cWWcWWcWW
61 IL_2Q1R_0012Q1R0.08450 ARNA (12-mer)C1003G1004A1005*U1008||||2_755A1009||||2_755G1010||||2_755cWWcWWcWW
62 IL_157D_002157D0.08740 B+ARNA (12-mer)C15G16A17*U8A9G10cWWcWWcWW
63 IL_3V2F_0173V2F0.13860 A23S Ribosomal RNAC806U807G808*C672C673G674cWWcWWcWW
64 IL_2QBG_0202QBG0.12310 B23S rRNAC806U807G808*C672C673G674cWWcWWcWW
65 IL_2ZJR_0132ZJR0.16860 X LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
66 IL_4A1B_0344A1B0.19720 126S RRNAC963U964G965*C828C829G830cWWcWWcWW
67 IL_3U5H_0283U5H0.19040 525S rRNAC938U939G940*C803C804G805cWWcWWcWW
68 IL_1S72_0241S720.25520 0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
69 IL_3U5H_0083U5H0.23510 525S rRNAC125U126G127*C141C142G143cWWcWWcWW
70 IL_3RW6_0043RW60.24850 Hconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
71 IL_2XZM_0902XZM0.24950 A18S RRNAC1644C1645U1646*A1679A1680G1681cWWcWW
72 IL_4A1B_0134A1B0.35170 126S RRNAC422U423G424*C656U657G658cWWcWW
73 IL_3U5F_0873U5F0.35750 618S rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
74 IL_3GLP_0013GLP0.33050 A+BRNA (8-mer)C2U3G4*C5||AU6G7cWWcWW
75 IL_2ZJR_1072ZJR0.38560 Y 5S rRNAU82C83G84*C97C98G99cWWcBWcWW
76 IL_2XZM_0372XZM0.33321 A18S RRNAU647U649C650*G659U660G661ncWWncWW
77 IL_2AW7_0522AW70.41390 A16S ribosomal RNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
78 IL_4A1B_1044A1B0.28890 126S RRNAG2775C2776U2777*A2758A2759C2760cWWcWWacWW
79 IL_2XZM_0852XZM0.29990 A18S RRNAG1614U1615C1616*G1710U1711C1712cWWncWwcWW
80 IL_3U5F_0823U5F0.25250 618S rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
81 IL_2AW7_0622AW70.19320 A16S ribosomal RNAG1405U1406C1407*G1494U1495C1496cWWncWwcWW
82 IL_4A1B_0284A1B0.25250 126S RRNAG820U821U822*A689U690C691cWWncWwcWW
83 IL_3TD0_0013TD00.20520 A+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
84 IL_3BNQ_0013BNQ0.24440 B+AA site of human mitochondrial ribosome, A chainG19U20C21*G5U6C7cWWncWwcWW
85 IL_3U5H_1213U5H0.27710 525S rRNAA3040U3041U3042*A3012U3013U3014cWWcWwcWW
86 IL_2O3V_0042O3V0.24200 A+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
87 IL_2FQN_0042FQN0.24760 A+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
88 IL_2FQN_0012FQN0.28100 B+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
89 IL_3TD0_0063TD00.28250 A+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
90 IL_2OE5_0012OE50.28890 A+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
91 IL_1T0D_0021T0D0.28710 B+ARNA (16-mer)G24U25C26*G10U11C12cWWcWwcWW
92 IL_3BNL_0013BNL0.32600 B+AA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
93 IL_3BNL_0043BNL0.33380 A+BA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
94 IL_3BNT_0063BNT0.32070 AA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
95 IL_3BNT_0013BNT0.32080 AA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
96 IL_3BNP_0043BNP0.33530 A+BA site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chainG18U19C20*G3U4C5cWWcWwcWW
97 IL_3BNP_0013BNP0.34980 B+AA site of human mitochondrial ribosome, B chainG17U18C19*G4U5C6cWWcWwcWW
98 IL_1O9M_0041O9M0.37160 A+BEUBACTERIAL A-SITEG1494U1495C1496*G1405U1406C1407cWWcWwcWW
99 IL_1MZP_0011MZP0.35970 Bfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
100 IL_4FNJ_0014FNJ0.33920 ARNA (35-MER)C1U2G3*C33U34G35cWWcWwcWW
101 IL_3U5H_0363U5H0.28370 525S rRNAU954U955U956*A965U966A967cWWcWwcWW
102 IL_4A1B_0414A1B0.31750 126S RRNAU979U980U981*A990U991A992cWWcWwcWW
103 IL_3U4M_0013U4M0.28770 B LSU rRNAC2179U2180U2181*A2108U2109G2110cWWcWwcWW
104 IL_1S72_0471S720.31830 0 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
105 IL_3U5H_1283U5H0.31890 525S rRNAU3280U3281U3282*A3168U3169A3170cWWcWwcWW
106 IL_1U9S_0071U9S0.30320 ARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
107 IL_405D_002405D0.26970 A+BRNA (16-mer)A10A11U12*A21C22U23cWWcWWcWW
108 IL_405D_001405D0.26870 B+ARNA (16-mer)A26A27U28*A5C6U7cWWcWWcWW
109 IL_1Z7F_0021Z7F0.28400 ARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
110 IL_1Z7F_0011Z7F0.28400 ARNA (16-mer)A10||||6_765A11||||6_765U12||||6_765*A5C6U7cWWcWWcWW
111 IL_3U5F_0343U5F0.28610 618S rRNAA973A974C975*G624C625U626cWWcWWcWW
112 IL_3U5H_0873U5H0.30830 525S rRNAA2106A2107C2108*G1940C1941U1942cWWcWWcWW
113 IL_3U5H_0173U5H0.31460 525S rRNAU429U430U431*A628U629A630cWWcWW
114 IL_2XZM_0202XZM0.34300 A18S RRNAU397A398C399*G380G381A382cWWcWW
115 IL_3U5F_0633U5F0.33640 618S rRNAG1213U1214C1215*G1448U1449U1450cWWncWwcWW
116 IL_1T0E_0021T0E0.31200 C+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
117 IL_1KFO_0031KFO0.22770CA cWWARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
118 IL_1KFO_0021KFO0.22770CA cWWARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
119 IL_3U5F_0843U5F0.23000 618S rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
120 IL_4A1B_0714A1B0.23190 126S RRNAA1685G1686C1687*G1812A1813U1814cWWcWWcWW
121 IL_2XZM_0342XZM0.22760 A18S RRNAA951A952C953*G618C619U620cWWcWWcWW
122 IL_3TD1_0063TD10.23320 B+ARNA (23-mer)G28U29C30*G19U20C21cWWncWwcWW
123 IL_1MWL_0011MWL0.22490 A+BRNA (22-mer)G4U5C6*G40U41C42cWWncWwcWW
124 IL_1FJG_0561FJG0.25360 A SSU rRNAG1405U1406C1407*G1494U1495C1496cWWncWwcWW
125 IL_2XZM_0812XZM0.29830 A18S RRNAG1518U1519U1520*A1535U1536C1537cWWcWW
126 IL_4A1B_0524A1B0.30640 126S RRNAA1147U1148U1149*A1163C1164U1165cWWcWWcWW
127 IL_3U5H_0513U5H0.31570 525S rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
128 IL_1FJG_0621FJG0.34120 A SSU rRNAG1435U1436C1437*G1464C1465C1466cWWcWWcWW
129 IL_3U5F_0893U5F0.35470 618S rRNAG1672G1673C1674*G1727A1728C1729cWWcWWcWW
130 IL_3IVK_0043IVK0.33100 Cclass I ligase productA102A103C104*G87G88U89cWWcWWcWW
131 IL_3U5H_0763U5H0.30660 525S rRNAG1661G1662C1663*G1786A1787C1788cWWcWWcWW
132 IL_3U5H_0223U5H0.32780 525S rRNAG792C793U794*G668U669C670cWWcWWcWW
133 IL_2ZJR_0192ZJR0.25120 X LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
134 IL_2XZM_0362XZM0.33840 A18S RRNAA665A666C667*G641G642U643cWWcWWcWW
135 IL_4A1B_0154A1B0.38750 126S RRNAG443A444C445*G532G533U534cWWncWWcWW
136 IL_4A1B_1074A1B0.39730 126S RRNAG2812C2813U2814*G2851A2852U2853cWWcWWacWW
137 IL_3U5H_1093U5H0.38710 525S rRNAG2824C2825U2826*G2863A2864U2865cWWcWWacWW
138 IL_3U5H_0493U5H0.28180 525S rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
139 IL_3U5F_0613U5F0.26290 618S rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
140 IL_3U5H_1493U5H0.27801 75S rRNAA84G85G87*C94A95U96cWWcWWcWW
141 IL_3DIR_0063DIR0.17340 ARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
142 IL_3D0U_0063D0U0.17520 ALysine Riboswitch RNAG112G113G114*C134A135C136cWWcWWcWW
143 IL_5MSF_0015MSF0.21111 RRNA (18-mer)G3||||P_1G4||||P_1G6||||P_1*C13||||P_1A14||||P_1C15||||P_1cWWcWWcWW
144 IL_3CUN_0023CUN0.15300 CRNA (92-MER)U57G58G59*C87A88G89ncWWcWWcWW
145 IL_1FJG_0101FJG0.23470 A SSU rRNAG190|||KU190|||LG191*C186C187C188cWWcWWcWW
146 IL_2QBG_0302QBG0.32160 B23S rRNAG856G857G858*U919A920C921cWWcWWcWW
147 IL_1NLC_0021NLC0.35411 B+AHIV-1 DIS(MAL) genomic RNAG7||AG9||AG10*C15A16C17cWWcWWcWW
148 IL_1XJR_0031XJR0.36311 As2m RNAG32G34G35*C16A17C18cWWcWWcWW
149 IL_1NLC_0011NLC0.40501 A+BHIV-1 DIS(MAL) genomic RNAG7G9G10*C15A16C17cWWcWWcWW
150 IL_1MFQ_0031MFQ0.45750 A SRP RNAA163G164G165*U132A133U134cWWncWWcWW
151 IL_3TD0_0023TD00.40581Isolated non-canonical cWW with bulgesB+ARNA (23-mer)G39A40G42*C7G8C9cWWcWWcWW
152 IL_3TD0_0053TD00.39441Isolated non-canonical cWW with bulgesA+BRNA (23-mer)G16A17G19*C30G31C32cWWcWWcWW
153 IL_2XZM_0862XZM0.43781 A18S RRNAG1707A1708G1710*C1616G1617C1618cWWcWWcWW
154 IL_2XZM_0432XZM0.39551 A18S RRNAG935U936U938*G846A847C848cWWncWWncWW
155 IL_4AOB_0054AOB0.38520 A SAM-I riboswitchG71A72G73*C78G79U80cWWncWWcWW
156 IL_3U5H_1163U5H0.40510 525S rRNAG2912C2913G2914*C2889A2890U2891cWWncWWacWW
157 IL_1FJG_0581FJG0.33320 A SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
158 IL_2AW7_0642AW70.27970 A16S ribosomal RNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
159 IL_4A1B_0484A1B0.25590 126S RRNAA1035G1036A1037*U1065A1066U1067ncWWncWWcWW
160 IL_3U5H_1333U5H0.17230 525S rRNAG3252G3253G3254*C3233A3234C3235cWWcWWcWW
161 IL_3U5H_0443U5H0.17140 525S rRNAA1009G1010A1011*U1039A1040U1041cWWcWWcWW
162 IL_1FJG_0061FJG0.20420 A SSU rRNAC99A101G102*C67G68G69cWWcWWcWW
163 IL_3U5F_0023U5F0.22160 618S rRNAU35C36U37*A471U472A473cWWcWWcWW
164 IL_3TD1_0013TD10.26670 B+ARNA (23-mer)G42U43C44*G5U6C7cWWncwWcWW
165 IL_1MWL_0041MWL0.28870 A+BRNA (22-mer)G18||AU19C20*G26U27C28cWWncwWcWW
166 IL_2ZKO_0012ZKO0.26880 D+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
167 IL_2XZM_0692XZM0.33240 A18S RRNAU1262G1263G1264*C1295G1296A1297cWWcWW
168 IL_3V2F_0803V2F0.50540 A23S Ribosomal RNAC2085U2086G2087*U2232U2233G2234cWWcwWcWW
169 IL_2QBG_0832QBG0.50220 B23S rRNAC2232U2233G2234*U2085U2086G2087cWWcwWcWW
170 IL_2ZJR_0792ZJR0.44380 X LSU rRNAC2068U2069G2070*U2211U2212G2213cWWcwWncWW
171 IL_3U5F_0413U5F0.49820 618S rRNAA799U800G801*U748U749U750cWWcwWcWW
172 IL_2XZM_0752XZM0.39810 A18S RRNAC1323U1324G1325*U1341U1342G1343cWWncWwncWW
173 IL_2ZJR_0102ZJR0.30270 X LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
174 IL_3V2F_0153V2F0.28470 A23S Ribosomal RNAA575U576G577*C564C565U566cWWcWWcWW
175 IL_2QBG_0182QBG0.28910 B23S rRNAA575U576G577*C564C565U566cWWcWWcWW
176 IL_2XZM_0152XZM0.29970 A18S RRNAA254C255U256*A201U202U203cWWncWWcWW
177 IL_3U5F_0153U5F0.30940 618S rRNAA257C258U259*A206U207U208cWWcWWcWW
178 IL_3V2F_0813V2F0.34680 A23S Ribosomal RNAC2108U2109G2110*C2179U2180G2181cWWncWwcWW
179 IL_3RG5_0013RG50.38380 ASelenocysteine transfer RNAA5|||BU6G7*C66U67U67|||AcWWcwWcWW
180 IL_3U5F_0433U5F0.40991 618S rRNAA850U851C852*G819U821U822cWWcwWcWW
181 IL_4A1B_1154A1B0.33900 126S RRNAA2914C2915C2916*G2906A2907U2908cWWcWWcWW
182 IL_2ZJR_0252ZJR0.35150 X LSU rRNAA936C937G938*C864A865U866cWWcWWcWW
183 IL_2O3X_0042O3X0.36040 B+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
184 IL_2O3V_0012O3V0.31860 A+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
185 IL_4A1B_0834A1B0.38090 126S RRNAG1964C1965U1966*A2102A2103C2104cWWcWWcWW
186 IL_1ZX7_0081ZX70.36880 G+HRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWcwWcWW
187 IL_1ZX7_0021ZX70.37570 A+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWcwWcWW
188 IL_3BNQ_0063BNQ0.37580 A+BA site of human mitochondrial ribosome, A chainG19U20C21*G5U6C7cWWcwWcWW
189 IL_1MFQ_0021MFQ0.32240 A SRP RNAA228U229C230*G120U121U122cWWcwWcWW
190 IL_1YZ9_0011YZ90.30990 C+DRNA (11-mer)A4C5U6*A15C16U17cWWncWBcWW
191 IL_1YZ9_0021YZ90.28430 F+ERNA (11-mer)A15C16U17*A4C5U6cWWncWBcWW
192 IL_3MEI_0023MEI0.32140 B+ARNA (23-mer)G13C14C15*G8C9C10cWWncWBcWW
193 IL_3U5H_1183U5H0.33250 525S rRNAA2926C2927C2928*G2918A2919U2920cWWcWWcWW
194 IL_1FJG_0441FJG0.44480 A SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
195 IL_2ZJR_0532ZJR0.57241 X LSU rRNAG1573A1574G1576*U1447A1448C1449cWWncWwcWW
196 IL_3V2F_0533V2F0.58491 A23S Ribosomal RNAC1557A1558G1560*U1433A1434G1435cWWntHWcWW
197 IL_2QBG_0852QBG0.70110 B23S rRNAC2179U2180U2181*A2108U2109G2110cWWcWW
198 IL_3U5F_0653U5F0.54030 618S rRNAA1234C1235A1236*U1249U1250U1251cWWcWW
199 IL_2AW7_0632AW70.53031 A16S ribosomal RNAG1491A1492G1494*C1407A1408C1409ncWWcWW
200 IL_2QEK_0022QEK0.72251 B+AHIV-1 subtype F DIS genomic RNAG7A9G10*C15A16C17cWWcWW
201 IL_1O9M_0031O9M0.67141 A+BEUBACTERIAL A-SITEG1491A1493G1494*C1407A1408C1409cWWcWW
202 IL_3LOA_0033LOA0.75811Decoding loop with one bulged AB+ARNA (23-mer)G1491A1493G1494*C1407A1408C1409cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC31
CUG*CUG26
CUG*CCG6
GAAG*CAC5
CUU*AUG4
CGA*UAG4
UUU*AUA4
AAU*ACU4
CUG*UUG4
CAG*CAG3
GCU*AAC3
AUU*ACU3
GGG*CAC3
GAGG*CAC3
GCGAG*CUC2
GUGAG*CUC2
AUG*UUU2
UUA*UUG2
GAG*UCC2
UUA*UUA2
GUU*AUC2
AAC*GCU2
GAG*CCU2
GUC*GCC2
GGC*GAC2
GCU*GAU2
GAAG*CGC2
GGG*CAU2
AGA*UAU2
AUG*CCU2
ACC*GAU2
ACU*ACU2
CUGU*ACUUUG1
ACUCUG*CUGU1
CUGU*ACUAGG1
CUC*GCGAG1
GCAC*GAC1
GUGC*GGC1
AUUC*GGU1
GCCG*CAC1
AGUG*CGU1
GAUG*CGC1
CGGG*CAG1
AAC*GAU1
CGA*UGG1
CGC*GGUG1
CAG*CCG1
CGG*CGG1
UCG*CAA1
UCA*UCA1
CCU*GCG1
CCG*CCG1
CUGC*GAG1
CUAC*GAG1
CCG*CUG1
CUA*UCG1
CCU*AAG1
UCG*CCG1
UUUC*GUG1
AUU*AUU1
CUC*GUG1
CAC*GCG1
GGA*UAC1
GUC*GUU1
UAC*GAA1
AGC*GAU1
AAC*GGU1
GCU*GUC1
GGU*AAC1
GAC*GGU1
GUG*CUU1
GCG*CCU1
AGUG*CAU1
GGAG*CAC1
UGG*CAG1
GUG*CCC1
GGG*UAC1
AGG*UAU1
CGC*GAAG1
GAC*GUUU1
GAG*CGU1
GCG*CAU1
CAG*CGG1
UCU*AUA1
UGG*CGA1
CCU*AUG1
ACU*AUU1
AUG*CUU1
AUC*GUUU1
ACG*CAU1
AUC*GUU1
GCC*GCC1
GACG*UAC1
UAG*CAGG1
ACA*UUU1
Non-Watson-Crick part of the motif
SequenceCounts
U*U83
G*A19
U*C15
A*C12
C*A11
C*C8
C*U6
AA*A5
A*A5
A*G4
G*G3
AG*A3
CGA*U2
UGA*U2
AA*G2
UG*CUUU1
CUCU*UG1
UG*CUAG1
U*CGA1
CA*A1
UG*G1
UU*G1
CC*A1
GU*G1
AU*G1
GG*A1
G*GU1
UG*A1
UA*A1
UU*U1
GU*A1
GA*A1
G*AA1
A*UU1
U*UU1
AC*A1
A*AG1

Release history

Release0.9
Date2013-02-17
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_47174.3Only in the parent motif
IL_47174.2
Compare		IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_1O9M_003, IL_3U5H_109, IL_1S72_047, IL_2XZM_034, IL_2XZM_036, IL_2XZM_037, IL_3U5H_076, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2ZJR_063, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3V2F_053, IL_1T0E_002, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_2XZM_001, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_2ZJR_090, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2XZM_081, IL_1XJR_003, IL_2QBG_085, IL_2QBG_083, IL_2ZJR_036, IL_2ZJR_030, IL_3TD0_006, IL_3U5H_008, IL_2XZM_012, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_2XZM_090, IL_4E48_006, IL_3BNQ_006, IL_2ZJR_025, IL_3NJ7_002, IL_2Q1R_002, IL_4A1B_061, IL_2XZM_069, IL_2QBG_020, IL_1MFQ_003, IL_3U5H_017, IL_2XZM_060, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_3U5H_028, IL_5MSF_001, IL_3V2F_081, IL_3V2F_080, IL_2ZJR_053, IL_4A1C_009, IL_3BNP_004, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3U5H_022, IL_2XZM_075, IL_3U5F_089, IL_3BNQ_001, IL_2XZM_072, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_2QBG_065, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_405D_002, IL_1MWL_004, IL_3V2F_094, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_3V2F_064, IL_3U5H_036, IL_2XZM_043, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3V2F_015, IL_3DIR_006, IL_3V2F_017, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_1FJG_006, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_4A1B_015, IL_3MEI_002, IL_1YZ9_001, IL_4A1B_034, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_3U5H_121, IL_2XZM_058, IL_3U4M_001, IL_2XZM_020, IL_3U5F_065, IL_3U5F_063, IL_2ZJR_042, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_3SZX_001, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4A1B_083, IL_3TD0_005, IL_1U6B_005, IL_3TD0_001, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_1ZX7_002, IL_3U5H_114, IL_3V2F_034, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_1UN6_005, IL_3U5H_051, IL_2QBG_034, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_2ZJR_079, IL_4A1B_104, IL_3FO4_001, IL_1S72_024, IL_4AOB_005, IL_2AW7_062IL_4FNJ_002, IL_4FNJ_001

Children motifs

Child motifCommon motif instancesOnly in IL_47174.3Only in the child motif
IL_47174.4
Compare		IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_1O9M_003, IL_3U5H_109, IL_1S72_047, IL_2XZM_034, IL_2XZM_036, IL_2XZM_037, IL_3U5H_076, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2ZJR_063, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3V2F_053, IL_1T0E_002, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_2XZM_001, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_2ZJR_090, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2XZM_081, IL_1XJR_003, IL_2QBG_085, IL_2QBG_083, IL_2ZJR_036, IL_2ZJR_030, IL_3TD0_006, IL_3U5H_008, IL_2XZM_012, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_2XZM_090, IL_4E48_006, IL_3BNQ_006, IL_2ZJR_025, IL_3NJ7_002, IL_2Q1R_002, IL_4A1B_061, IL_2XZM_069, IL_2QBG_020, IL_1MFQ_003, IL_3U5H_017, IL_2XZM_060, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_3U5H_028, IL_5MSF_001, IL_3V2F_081, IL_3V2F_080, IL_2ZJR_053, IL_4A1C_009, IL_3BNP_004, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3U5H_022, IL_2XZM_075, IL_3U5F_089, IL_3BNQ_001, IL_2XZM_072, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_2QBG_065, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_405D_002, IL_1MWL_004, IL_3V2F_094, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_3V2F_064, IL_3U5H_036, IL_2XZM_043, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3V2F_015, IL_3DIR_006, IL_3V2F_017, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_1FJG_006, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_4A1B_015, IL_3MEI_002, IL_1YZ9_001, IL_4A1B_034, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_3U5H_121, IL_2XZM_058, IL_2XZM_020, IL_3U5F_065, IL_3U5F_063, IL_2ZJR_042, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_3SZX_001, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4FNJ_002, IL_4A1B_083, IL_3TD0_005, IL_1U6B_005, IL_3TD0_001, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_1ZX7_002, IL_3U5H_114, IL_3V2F_034, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_1UN6_005, IL_3U5H_051, IL_2QBG_034, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_2ZJR_079, IL_4A1B_104, IL_3FO4_001, IL_1S72_024, IL_4AOB_005, IL_2AW7_062IL_3U4M_001IL_3UMY_001
Annotations
  • Isolated non-canonical cWW with bulges (4)
  • UU cWW (3)
  • CA cWW (2)
  • Decoding loop with one bulged A (1)
  • UU cWW water inserted (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.45 | Max 1.24
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