RNA 3D Hub //

Motif IL_48679.1 Version IL_48679.1 of this group appears in releases 3.89 to 3.89

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_8C3A_5048C3A0.52221Isolated cWH basepairCM SSU rRNAA1050C1051G1052*U1036U1037U1039cWWcWHncWW
2 IL_8C3A_4078C3A0.40511Isolated cWH basepairCM SSU rRNAA263U265C266*G285A286U287cWWcWW
3 IL_4V88_4554V880.45751Isolated non-canonical cWW pairA6 SSU rRNAG1383A1384G1385*C1339A1341C1342cWWncWwcWW
4 IL_7A0S_0927A0S0.38281Other ILX LSU rRNAC2570G2571U2572*A2579C2580G2582cWWcWW
5 IL_7A0S_0427A0S0.26580Isolated non-canonical cWW pairX LSU rRNAC1218C1219G1220*C1252C1253G1254cWWncWBcWW
6 IL_4V88_4534V880.30330Isolated cWH basepairA6 SSU rRNAC1323G1324A1325*U1290G1291G1292cWWcWHcWW
7 IL_8AF0_0048AF00.39390Isolated non-canonical cWW pairD+CRNA (19-mer)C31C32U33*A37C38G39cWWncWW
8 IL_3R1D_0023R1D0.29200Isolated cWH basepairB+ARNA (11-mer)C5G6G7*C5G6G7cWWcWHcWW
9 IL_4WF9_0454WF90.28100Isolated cWH basepairX LSU rRNAG1243G1244G1245*C1277G1278C1279cWWcWHcWW
10 IL_406D_005406D0.25480Isolated cWH basepairE+ARNA (17-mer)U25||CG26||CG27||C*U8||CG9||CG10||CcWWncWHcWW
11 IL_406D_002406D0.26900Isolated cWH basepairA+ERNA (17-mer)U8||AG9||AG10||A*U25||AG26||AG27||AcWWncWHcWW
12 IL_4KQ0_0034KQ00.22860Isolated cWH basepairE+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
13 IL_4E5C_0014E5C0.27800Isolated cWH basepairA+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
14 IL_3SJ2_0013SJ20.22220Isolated cWH basepairB+ARNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
15 IL_3R1C_0173R1C0.25190Isolated cWH basepairQ+RRNA (8-mer)C2G3G4*C5G6G7cWWcWHcWW
16 IL_3SJ2_0023SJ20.24800Isolated cWH basepairB+ARNA (17-mer)C10G11G12*C10G11G12cWWcWHcWW
17 IL_3SJ2_0033SJ20.23240Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
18 IL_3R1C_0113R1C0.23250Isolated cWH basepairL+KRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
19 IL_3R1C_0123R1C0.20690Isolated cWH basepairK+LRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
20 IL_3R1C_0183R1C0.20060Isolated cWH basepairR+QRNA (8-mer)C2G3G4*C5G6G7cWWcWHcWW
21 IL_3CZW_0023CZW0.23460Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||2_555G8||||2_555A9||||2_555cWWcWHcWW
22 IL_3CZW_0013CZW0.23460Isolated cWH basepairXRNA (16-mer)U10||||2_555G11||||2_555A12||||2_555*U7G8A9cWWcWHcWW
23 IL_2R1S_0022R1S0.22490Isolated cWH basepairA+BRNA (13-mer)5BU6G7A8*5BU19G20A21cWWcWHcWW
24 IL_3W3S_0033W3S0.20730Isolated cWH basepairBSelenocysteine transfer RNAA47|||NG47|||OC47|||P*G47|||AG47|||BU47|||CcWWcWHcWW
25 IL_3R1D_0033R1D0.29790Isolated cWH basepairA+BRNA (11-mer)C8G9G10*C2||AGRB3G4cWWcWHcWW
26 IL_4KQ0_0054KQ00.24210Isolated cWH basepairB+ERNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
27 IL_4KQ0_0014KQ00.24240Isolated cWH basepairE+BRNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
28 IL_6IA2_0036IA20.26890Isolated cWH basepairB+ARNA (19-mer)C9G10||AG11||A*C9G10||AG11cWWcWHcWW
29 IL_4J50_0014J500.25090Isolated cWH basepairA+BRNA (19-mer)C7A8G9*C13A14G15cWWcWW
30 IL_4J50_0034J500.25020Isolated cWH basepairB+ARNA (19-mer)C7A8G9*C13A14G15cWWcWW
31 IL_5J7L_0115J7L0.24930Isolated cWH basepairAA SSU rRNAG144G145G146*C176G177C178cWWcWHcWW
32 IL_2H1M_0022H1M0.20890Isolated cWH basepairB+ARNA (16-mer)A26A27U28*A5G6U7cWWncWHcWW
33 IL_2H1M_0032H1M0.22240Isolated cWH basepairA+BRNA (16-mer)A10A11U12*A21G22U23cWWncWHcWW
34 IL_4KQ0_0024KQ00.14320Isolated cWH basepairE+BRNA (19-mer)C12G13G14*C6G7G8cWWcWHcWW
35 IL_4KQ0_0044KQ00.14240Isolated cWH basepairB+ERNA (19-mer)C12G13G14*C6G7G8cWWcWHcWW
36 IL_6RA4_0026RA40.17400Isolated cWH basepairM+LRNA (9-mer)U403G404A405*U403G404A405cWWcWHcWW
37 IL_3D0M_0013D0M0.18730Isolated cWH basepairXRNA (16-mer)U10||||16_545G11||||16_545A12||||16_545*U7G8A9ncWWcWHcWW
38 IL_3D0M_0023D0M0.18730Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||16_545G8||||16_545A9||||16_545ncWWcWHcWW
39 IL_3R1E_0013R1E0.22150Isolated cWH basepairB+ARNA (8-mer)C5G6G7*C2GRB3G4cWWcWHcWW
40 IL_5F5F_0015F5F0.24790Isolated cWH basepairBRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
41 IL_5F5F_0035F5F0.23560Isolated cWH basepairFRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
42 IL_4WF9_1214WF90.17800Isolated cWH basepairY 5S rRNAU3G4G5*C110A111G112ncWWancWHcWW
43 IL_4V88_4054V880.17940Isolated cWH basepairA6 SSU rRNAU406A407C408*G389G390A391cWWcWHcWW
44 IL_8C3A_4138C3A0.21180Isolated cWH basepairCM SSU rRNAG387G388A389*U404A405C406cWWcHWcWW
45 IL_4YHW_0024YHW0.20320Isolated non-canonical cWW pairF+DU6 snRNA fragmentC68C69U70*A11C12G13cWWcWW
46 IL_4YHW_0014YHW0.18360Isolated non-canonical cWW pairC+EU4 snRNA fragment + U6 snRNA fragmentA11C12G13*C68C69U70cWWcWW
47 IL_8C3A_1188C3A0.19720Isolated non-canonical cWW pair1 LSU rRNAG2884C2885G2886*C2861A2862U2863cWWncWWcWW
48 IL_5TBW_1105TBW0.20250Isolated non-canonical cWW pair1 LSU rRNAG2912C2913G2914*C2889A2890U2891cWWncWWacWW
49 IL_4V88_4444V880.20160Isolated non-canonical cWW pairA6 SSU rRNAC1173C1174U1175*G1464C1465G1466cWWncWBcWW
50 IL_8C3A_4508C3A0.24770Isolated non-canonical cWW pairCM SSU rRNAC1158C1159U1160*G1450C1451G1452cWWncWBcWW
51 IL_406D_004406D0.21890Isolated cWH basepairA+ERNA (17-mer)U8||BG9||BG10||B*U25||BG26||BG27||BcWWcWHcWW
52 IL_8AMI_0018AMI0.17060Other ILA+BRNA (9-mer)U4G5G6*U4G5||AG6cWWcWW
53 IL_4V88_4654V880.23860Isolated non-canonical cWW pairA6 SSU rRNAG1757U1758C1759*G1642U1643C1644cWWcWW
54 IL_5J7L_3635J7L0.18720Isolated non-canonical cWW pairAA SSU rRNAG1494U1495C1496*G1405U14065MC1407cWWcWW
55 IL_8C3A_4728C3A0.20740Isolated non-canonical cWW pairCM SSU rRNAG1744U1745C1746*G1629U1630C1631cWWcWW
56 IL_1RPU_0011RPU0.17040Isolated non-canonical cWW pairC+DRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncWBcWW
57 IL_5MWI_0045MWI0.10560Isolated non-canonical cWW pairARNA G(CUG)8C duplexC14||||4_555U15||A||4_555G16||||4_555*C11U12||AG13cWWcWW
58 IL_5MWI_0055MWI0.10560Isolated non-canonical cWW pairARNA G(CUG)8C duplexC14U15||AG16*C11||||4_555U12||A||4_555G13||||4_555cWWcWW
59 IL_3GM7_0053GM70.11670Isolated non-canonical cWW pairG+HRNA (18-mer)C13U14G15*C4U5G6cWWcWW
60 IL_4E59_0014E590.07980Isolated non-canonical cWW pairB+ARNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncWBcWW
61 IL_3GM7_0023GM70.00000Isolated non-canonical cWW pairG+HRNA (18-mer)C4U5G6*C13U14G15cWWcWW
62 IL_3GM7_0043GM70.10130Isolated non-canonical cWW pairG+HRNA (18-mer)C10U11G12*C7U8G9cWWncwWcWW
63 IL_3GM7_0033GM70.12410Isolated non-canonical cWW pairH+GRNA (18-mer)C10U11G12*C7U8G9cWWncwWcWW
64 IL_5MWI_0075MWI0.10900Isolated non-canonical cWW pairARNA G(CUG)8C duplexC20U21G22*C5||||4_555U6||||4_555G7||||4_555cWWcWW
65 IL_5MWI_0025MWI0.10900Isolated non-canonical cWW pairARNA G(CUG)8C duplexC20||||4_555U21||||4_555G22||||4_555*C5U6G7cWWcWW
66 IL_5VCI_0025VCI0.11760Isolated non-canonical cWW pairB+ARNA (12-mer)C7U8G9*C4U5G6cWWncwWcWW
67 IL_3GM7_0063GM70.12600Isolated non-canonical cWW pairG+HRNA (18-mer)C16U17G18*C1U2G3cWWncwWcWW
68 IL_3SZX_0013SZX0.11730Isolated non-canonical cWW pairA+BRNA (19-mer)C7U8G9*C13U14G15cWWcWW
69 IL_4E48_0034E480.10760Isolated non-canonical cWW pairA+BRNA (20-mer)C8U9G10*C31U32G33cWWcWW
70 IL_4E48_0024E480.10590Isolated non-canonical cWW pairB+ARNA (20-mer)C34U35G36*C5U6G7cWWcWW
71 IL_4E48_0014E480.12370Isolated non-canonical cWW pairA+BRNA (20-mer)C2U3G4*C37U38G39cWWcWW
72 IL_4E48_0044E480.11500Isolated non-canonical cWW pairB+ARNA (20-mer)C28U29G30*C11U12G13cWWncwWcWW
73 IL_1UN6_0051UN60.16350Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC79U80G81*C95U96G97cWWncwWcWW
74 IL_8AF0_0028AF00.14700Isolated cWH basepairC+DRNA (19-mer)G34U35C36*G34U35C36cWWcWHcWW
75 IL_4Y1M_0054Y1M0.19450Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchU4U5U6*A103U104A105cWWncwWcWW
76 IL_5TBW_0165TBW0.21850Isolated non-canonical cWW pair1 LSU rRNAA628U629A630*U429U430U431cWWcWW
77 IL_4V88_4704V880.25260Isolated non-canonical cWW pairA6 SSU rRNAU1734U1735G1736*U1665U1666A1667cWWcWW
78 IL_8C3A_4778C3A0.26190Isolated non-canonical cWW pairCM SSU rRNAU1721U1722G1723*U1652U1653A1654cWWncwWncWW
79 IL_7A0S_1077A0S0.31860Isolated non-canonical cWW pairY 5S rRNAC97C98G99*U82C83G84cWWncWBcWW
80 IL_4KYY_0024KYY0.32430Isolated non-canonical cWW pairA+BRNA 17-merU8U9G10*U8U9G10cWWcWW
81 IL_8C3A_4688C3A0.32580Isolated non-canonical cWW pairCM SSU rRNAC1496U1497G1498*U1483U1484G1485cWWcWW
82 IL_4WF9_0184WF90.34070Isolated non-canonical cWW pairX LSU rRNAU638U639G640*U705U706G707cWWcWW
83 IL_4P3U_0014P3U0.31260Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWW
84 IL_5ZTM_0015ZTM0.39960Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2C162C163G164*U118A119G120cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUG*CUG16
CGG*CGG15
UGA*UGA5
UGG*UGG4
GUC*GUC4
CCG*CCG2
CCU*ACG2
GGG*CGC2
CGG*C(GRB)G2
CAG*CAG2
AAU*AGU2
GGA*UGC2
GCG*CAU2
CCU*GCG2
UUG*UUA2
UUG*UUG2
ACG*UUGU1
AAUC*GAU1
GAG*CUAC1
CGU*ACAG1
CGA*UGG1
(5BU)GA*(5BU)GA1
AGC*GGU1
UGG*CAG1
UAC*GGA1
GGA*UAC1
ACG*CCU1
GUC*GU(5MC)1
UCA*UCA1
UUU*AUA1
AUA*UUU1
CCG*UCG1
CUG*UUG1
CCG*UAG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G31
U*U28
C*C9
A*G3
C*A3
G*(GRB)2
A*A2
G*A2
C*UG1
AU*A1
A*UA1
G*CA1

Release history

Release3.89
Date2024-10-09
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (42)
  • Isolated non-canonical cWW pair (40)
  • Other IL (2)
    • Basepair signature
    cWW-L-R-cWW
    Heat map statistics
    Min 0.00 | Avg 0.29 | Max 0.80
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 6.0095 s