Motif IL_49751.1 Version IL_49751.1 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-8	2-9	3-7	3-8	3-9	4-6	4-7	5-6
1	IL_4WF9_123	4WF9	0.7168	0	Partly complementary	X	LSU rRNA	C	1768	C	1769	C	1770	A	1771	G	1772	*	U	1757	A	1758	G	1759	G	1760	G	1761	cWW								ncWW
2	IL_5VOE_003	5VOE	0.7734	1	Triple non-canonical cWW pairs	A	Aptamer 11F7t (36-MER)	CFL	6	CFL	7	CFL	8	CFL	9	G	11	*	CFL	27	CFL	28	CFL	29	CFL	30	G	31	cWW						ncWB		cWW
3	IL_8D29_010	8D29	0.5443	0	Partly complementary	C	RNA (34-MER)	G	4	A	5	U	6	A	7	C	8	*	G	27	C	28	A	29	G	30	C	31	cWW		cWW		ncWW			ncWW	cWW
4	IL_4LFB_065	4LFB	0.6138	0	Triple non-canonical cWW pairs	A	SSU rRNA	G	713	G	714	A	715	A	716	C	717	*	G	673	G	674	A	675	A	676	U	677	ncWWa		cWW		ncwW			cWW	cWW
5	IL_5J7L_361	5J7L	0.6264	0	Triple non-canonical cWW pairs	AA	SSU rRNA	G	713	G	714	A	715	A	716	U	717	*	A	673	G	674	A	675	A	676	U	677	ncWWa		cWW		ncwW			cWW	cWW
6	IL_6CZR_409	6CZR	0.6503	0	Triple non-canonical cWW pairs	1a	SSU rRNA	G	697	G	698	A	699	A	700	C	701	*	G	657	G	658	A	659	A	660	U	661	ncWWa					ncwW		cWW	cWW
7	IL_6CZR_167	6CZR	0.5133	1	Partly complementary	1a	SSU rRNA	G	1388	U	1389	5MC	1390	A	1391	C	1392	*	G	1469	A	1470	G	1472	U	1473	C	1474	ncWW				ncWW			cWw	cWW
8	IL_7VYX_004	7VYX	0.4800	0	Partly complementary	C	sgRNA	U	37	U	38	A	39	U	40	C	41	*	G	21	G	22	A	23	U	24	G	25	ncWW		ncwW		ncwW			ncWWa	cWW
9	IL_7VYX_008	7VYX	0.3583	0	Partly complementary	C	sgRNA	G	51	U	52	G	53	C	54	C	55	*	G	11	A	12	C	13	U	14	U	15	ncWWa		ncwW		ncWW			ncWWa	cWW
10	IL_8S95_002	8S95	0.1866	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	101	C	102	U	103	U	104	G	105	*	C	84	U	85	C	86	C	87	G	88	cWW		ncwW		cWW			ncWw	cWW
11	IL_8VMB_003	8VMB	0.1248	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	51	U	52	C	53	C	54	U	55	*	A	68	C	69	U	70	U	71	G	72	cWW		cwW		cWW			ncwW	cWW
12	IL_8VMA_004	8VMA	0.0000	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	51	U	52	C	53	C	54	U	55	*	A	71	C	72	U	73	U	74	G	75	cWW		cwW		ncWW			ncWw	cWW
13	IL_8VM8_003	8VM8	0.1428	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	74	U	75	U	76	U	77	G	78	cWW		cwW		cWW			cWw	cWW
14	IL_8VM9_004	8VM9	0.1289	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	68	U	69	U	70	U	71	G	72	*	C	48	U	49	C	50	U	51	G	52	cWW	ncWW	cwW		cWW			cWw	cWW
15	IL_8DP3_002	8DP3	0.1459	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW	ncWW	cWW			cWw	cWW
16	IL_8SP9_002	8SP9	0.1708	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	99	U	100	U	101	U	102	G	103	*	C	82	U	83	C	84	U	85	G	86	cWW		ncwW		ncWW			cWw	cWW
17	IL_5BTM_001	5BTM	0.2043	0	Triple non-canonical cWW pairs	A	RNA (55-mer)	U	10	U	11	C	12	U	13	A	14	*	U	42	U	43	C	44	U	45	A	46	cWW	ncWW	cwW		ncWw			cwW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAAC*GGAAU	2
CUCCU*ACUUG	2
CUCUG*CUUUG	2
CUUUG*CUCUG	2
CCCAG*UAGGG	1
(CFL)(CFL)(CFL)(CFL)AG*(CFL)(CFL)(CFL)(CFL)G	1
GAUAC*GCAGC	1
GGAAU*AGAAU	1
GU(5MC)AC*GAAGUC	1
UUAUC*GGAUG	1
GUGCC*GACUU	1
CCUUG*CUCCG	1
UUCUA*UUCUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GAA	3
UCC*CUU	2
UCU*UUU	2
UUU*UCU	2
CCA*AGG	1
(CFL)(CFL)(CFL)A*(CFL)(CFL)(CFL)	1
AUA*CAG	1
U(5MC)A*AAGU	1
UAU*GAU	1
UGC*ACU	1
CUU*UCC	1
UCU*UCU	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	New id, > 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple non-canonical cWW pairs (12)
Partly complementary (5)
Basepair signature: cWW-cWW-cWW-cWW-cWW
Heat map statistics: Min 0.05 | Avg 0.45 | Max 0.83

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Coloring options: Nucleotide numbers

Motif IL_49751.1 Version IL_49751.1 of this group appears in releases 3.89 to 3.90 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_49751.1 Version IL_49751.1 of this group appears in releases 3.89 to 3.90

Download

Csv

Json