Motif IL_49751.2 Version IL_49751.2 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-8	2-9	3-7	3-8	3-9	4-7	5-6
1	IL_6ZDP_003	6ZDP	0.5936	1		B	Chains: B	G	1313	U	1314	U	1315	G	1317	U	1318	*	A	1298	C	1299	U	1300	U	1301	C	1302	cWW		ncwW					ncWW
2	IL_5BTM_001	5BTM	0.2106	0	Triple non-canonical cWW pairs	A	RNA (55-mer)	U	10	U	11	C	12	U	13	A	14	*	U	42	U	43	C	44	U	45	A	46	cWW	ncWW	cwW		ncWw		cwW	cWW
3	IL_8SP9_002	8SP9	0.1643	0	Triple non-canonical cWW pairs	C	tRNA scaffold,CVB3 Cloverleaf RNA	C	99	U	100	U	101	U	102	G	103	*	C	82	U	83	C	84	U	85	G	86	cWW		ncwW		ncWW		cWw	cWW
4	IL_8DP3_002	8DP3	0.0838	0	Triple non-canonical cWW pairs	R	RNA (90-MER)	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW	ncWW	cWW		cWw	cWW
5	IL_8VM9_004	8VM9	0.0000	0	Triple non-canonical cWW pairs	R	RNA (85-MER)	C	48	U	49	C	50	U	51	G	52	*	C	68	U	69	U	70	U	71	G	72	cWW		cwW	ncWW	cWW		cWw	cWW
6	IL_8VM8_003	8VM8	0.0849	0	Triple non-canonical cWW pairs	R	RNA (93-MER)	C	54	U	55	C	56	U	57	G	58	*	C	74	U	75	U	76	U	77	G	78	cWW		cwW		cWW		cWw	cWW
7	IL_8VMA_004	8VMA	0.1289	0	Triple non-canonical cWW pairs	C	RNA (88-MER)	A	71	C	72	U	73	U	74	G	75	*	C	51	U	52	C	53	C	54	U	55	cWW		ncwW		ncWW		cWw	cWW
8	IL_8VMB_003	8VMB	0.1852	0	Triple non-canonical cWW pairs	R	RNA (83-MER)	C	51	U	52	C	53	C	54	U	55	*	A	68	C	69	U	70	U	71	G	72	cWW		cwW		cWW		ncwW	cWW
9	IL_8S95_002	8S95	0.2041	0	Triple non-canonical cWW pairs	C	Lysine tRNA scaffold,Poliovirus cloverleaf RNA	C	101	C	102	U	103	U	104	G	105	*	C	84	U	85	C	86	C	87	G	88	cWW		ncwW		cWW		ncWw	cWW
10	IL_6CZR_167	6CZR	0.5088	1	Partly complementary	1a	SSU rRNA	G	1469	A	1470	G	1472	U	1473	C	1474	*	G	1388	U	1389	5MC	1390	A	1391	C	1392	cWW		cwW		ncWW			ncWW
11	IL_6CZR_409	6CZR	0.6324	0	Triple non-canonical cWW pairs	1a	SSU rRNA	G	697	G	698	A	699	A	700	C	701	*	G	657	G	658	A	659	A	660	U	661	ncWWa					ncwW	cWW	cWW
12	IL_5J7L_361	5J7L	0.6026	0	Triple non-canonical cWW pairs	AA	SSU rRNA	G	713	G	714	A	715	A	716	U	717	*	A	673	G	674	A	675	A	676	U	677	ncWWa		cWW		ncwW		cWW	cWW
13	IL_4LFB_065	4LFB	0.5909	0	Triple non-canonical cWW pairs	A	SSU rRNA	G	713	G	714	A	715	A	716	C	717	*	G	673	G	674	A	675	A	676	U	677	ncWWa		cWW		ncwW		cWW	cWW
14	IL_8D29_010	8D29	0.5494	0	Partly complementary	C	RNA (34-MER)	G	27	C	28	A	29	G	30	C	31	*	G	4	A	5	U	6	A	7	C	8	cWW		ncWW		ncWW		cWW	cWW
15	IL_8P9A_349	8P9A	0.5489	0		AR	LSU rRNA	C	3162	A	3163	C	3164	A	3165	C	3166	*	G	3284	C	3285	G	3286	U	3287	G	3288	cWW				ncWW		ncWWa	cWW
16	IL_4WF9_123	4WF9	0.7494	0	Partly complementary	X	LSU rRNA	U	1757	A	1758	G	1759	G	1760	G	1761	*	C	1768	C	1769	C	1770	A	1771	G	1772	ncWW							cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCUG*CUUUG	3
GGAAC*GGAAU	2
GUUUGU*ACUUC	1
UUCUA*UUCUA	1
CUUUG*CUCUG	1
ACUUG*CUCCU	1
CUCCU*ACUUG	1
CCUUG*CUCCG	1
GAAGUC*GU(5MC)AC	1
GGAAU*AGAAU	1
GCAGC*GAUAC	1
CACAC*GCGUG	1
UAGGG*CCCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCU*UUU	3
GAA*GAA	3
CUU*UCC	2
UUUG*CUU	1
UCU*UCU	1
UUU*UCU	1
UCC*CUU	1
AAGU*U(5MC)A	1
CAG*AUA	1
ACA*CGU	1
AGG*CCA	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple non-canonical cWW pairs (11)
Partly complementary (3)
(2)
Basepair signature: cWW-cWW-cWW-cWW-cWW
Heat map statistics: Min 0.05 | Avg 0.45 | Max 0.85

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Coloring options: Nucleotide numbers

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