Motif IL_53523.1 Version IL_53523.1 of this group appears in releases 3.2 to 3.2

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9	1-9	2-8	3-7	4-7	5-6
1	IL_4IOA_053	4IOA	0.3519	1	UAA/GAN	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435	cWW	tWH			cWW
2	IL_4V8P_280	4V8P	0.2496	1	UAA/GAN	D1	LSU rRNA	A	3092	U	3093	U	3094	A	3095	U	3096	*	A	3116	G	3117	A	3118	U	3120	cWW	ntWH		tHS	cWW
3	IL_4Y4O_213	4Y4O	0.2035	1	UAA/GAN	2A	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
4	IL_4WF9_036	4WF9	0.1879	1	UAA/GAN	X	LSU rRNA	C	1042	U	1043	A	1044	A	1045	G	1046	*	C	1197	G	1198	A	1199	G	1201	cWW	tWH		tHS	cWW
5	IL_5J7L_277	5J7L	0.1540	1	UAA/GAN	DA	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
6	IL_4IOA_032	4IOA	0.1695	1	UAA/GAN	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW	tWH		tHS	cWW
7	IL_4V9F_037	4V9F	0.1444	1	UAA/GAN	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW	tWH		tHS	cWW
8	IL_5J7L_295	5J7L	0.0000	1	UAA/GAN	DA	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
9	IL_4Y4O_231	4Y4O	0.0974	1	UAA/GAN	2A	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
10	IL_4Y4O_228	4Y4O	0.1396	1	UAA/GAN	2A	LSU rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
11	IL_4V9F_052	4V9F	0.1896	3	UAA/GAN	0	LSU rRNA	C	1456	U	1457	A	1458	A	1459	G	1460	*	C	1483	G	1484	A	1485	G	1489	cWW	tWH		tHS	cWW
12	IL_4V8P_225	4V8P	0.2303	2	UAA/GAN	D1	LSU rRNA	C	1558	U	1559	A	1560	A	1561	G	1562	*	C	1610	A	1611	A	1612	G	1615	cWW	tWH		tHS	cWW
13	IL_2XXA_007	2XXA	0.2600	3	UAA/GAN	F	SSRP RNA	A	62	U	63	A	64	A	65	G	66	*	C	31	G	32	A	33	U	37	cWW	ntWH		tHS	cWW
14	IL_4V5O_089	4V5O	0.5551	1	UAA/GAN	BA	SSU rRNA	C	78	G	79	A	80	A	81	A	82	*	U	63	U	64	A	66	G	67	cWW	ntSH	ntHW		cWW
15	IL_4WF9_075	4WF9	0.5530	0	UAA/GAN	X	LSU rRNA	C	1901	G	1902	A	1903	A	1904	G	1905	*	U	1891	U	1892	A	1893	G	1894	cWW	ntSH	ntHW		cWW
16	IL_4V9F_094	4V9F	0.4038	1	UAA/GAN	0	LSU rRNA	G	2754	G	2755	U	2756	A	2757	G	2758	*	U	2724	G	2725	A	2727	C	2728	cWW			tHS	cWW
17	IL_4Y4O_236	4Y4O	0.5576	0	UAA/GAN	2A	LSU rRNA	A	1469	G	1470	A	1471	A	1472	G	1473	*	U	1518	G	1519	G	1520	U	1523	cWW			tHS	cWW
18	IL_4V8P_284	4V8P	0.5383	0	UAA/GAN	D1	LSU rRNA	G	3195	G	3196	A	3197	A	3198	G	3199	*	U	3212	G	3213	A	3214	C	3215	cWW			ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	6
CUAAA*UGAUG	1
AUUAU*AGAAU	1
UUAAG*CGAGA	1
CUAAG*CGAUG	1
CUAAG*CGAAAUG	1
CUAAG*CAAAAG	1
AUAAG*CGAACCU	1
CGAAA*UUCAG	1
CGAAG*UUAG	1
GGUAG*UGUAC	1
AGAAG*UGGU	1
GGAAG*UGAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	6
UAA*GAU	2
UUA*GAA	1
UAA*GAG	1
UAA*GAAAU	1
UAA*AAAA	1
UAA*GAACC	1
GAA*UCA	1
GAA*UA	1
GUA*GUA	1
GAA*GG	1
GAA*GA	1

Release history

Release	3.2
Date	2018-09-26
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UAA/GAN (18)
Basepair signature: cWW-tWH-L-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.37 | Max 0.70

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Coloring options: Nucleotide numbers

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