Motif IL_53523.5 Version IL_53523.5 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_118 | 5TBW | 0.5408 | 2 | UAA/GAN related | 1 | LSU rRNA | C | 3084 | G | 3085 | A | 3086 | A | 3087 | G | 3088 | * | U | 3054 | U | 3055 | U | 3057 | G | 3059 | cWW | ntSW | cWW | ||
| 2 | IL_4V9F_094 | 4V9F | 0.4086 | 1 | UAA/GAN | 0 | LSU rRNA | G | 2754 | G | 2755 | U | 2756 | A | 2757 | G | 2758 | * | U | 2724 | G | 2725 | A | 2727 | C | 2728 | cWW | tHS | cWW | ||
| 3 | IL_7RQB_060 | 7RQB | 0.5261 | 0 | UAA/GAN | 1A | LSU rRNA | A | 1469 | G | 1470 | A | 1471 | A | 1472 | G | 1473 | * | U | 1518 | G | 1519 | G | 1520 | U | 1523 | cWW | tHS | cWW | ||
| 4 | IL_4WF9_075 | 4WF9 | 0.5542 | 0 | UAA/GAN | X | LSU rRNA | C | 1901 | G | 1902 | A | 1903 | A | 1904 | G | 1905 | * | U | 1891 | U | 1892 | A | 1893 | G | 1894 | cWW | ntSH | ntHW | cWW | |
| 5 | IL_5TBW_023 | 5TBW | 0.4487 | 0 | UAA/GAN | 1 | LSU rRNA | U | 741 | G | 742 | C | 743 | A | 744 | C | 745 | * | G | 725 | G | 726 | G | 727 | G | 728 | cWW | ntSH | tHS | cWW | |
| 6 | IL_5TBW_120 | 5TBW | 0.2130 | 1 | UAA/GAN | 1 | LSU rRNA | A | 3103 | U | 3104 | U | 3105 | A | 3106 | U | 3107 | * | A | 3127 | G | 3128 | A | 3129 | U | 3131 | cWW | tWH | tHS | cWW | |
| 7 | IL_4V9F_037 | 4V9F | 0.1040 | 1 | UAA/GAN | 0 | LSU rRNA | U | 1095 | U | 1096 | A | 1097 | A | 1098 | G | 1099 | * | C | 1257 | G | 1258 | A | 1259 | A | 1261 | cWW | tWH | tHS | cWW | |
| 8 | IL_7RQB_036 | 7RQB | 0.0856 | 1 | UAA/GAN | 1A | LSU rRNA | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | * | C | 1153 | G | 1154 | A | 1155 | G | 1157 | cWW | tWH | tHS | cWW | |
| 9 | IL_4WF9_036 | 4WF9 | 0.0918 | 1 | UAA/GAN | X | LSU rRNA | C | 1042 | U | 1043 | A | 1044 | A | 1045 | G | 1046 | * | C | 1197 | G | 1198 | A | 1199 | G | 1201 | cWW | tWH | tHS | cWW | |
| 10 | IL_5J7L_277 | 5J7L | 0.0799 | 1 | UAA/GAN | DA | LSU rRNA | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | * | C | 1153 | G | 1154 | A | 1155 | G | 1157 | cWW | tWH | tHS | cWW | |
| 11 | IL_7A0S_033 | 7A0S | 0.0000 | 1 | UAA/GAN | X | LSU rRNA | C | 1009 | U | 1010 | A | 1011 | A | 1012 | G | 1013 | * | C | 1164 | G | 1165 | A | 1166 | G | 1168 | cWW | tWH | tHS | cWW | |
| 12 | IL_5J7L_295 | 5J7L | 0.1492 | 1 | UAA/GAN | DA | LSU rRNA | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | * | C | 1417 | G | 1418 | A | 1419 | G | 1421 | cWW | tWH | tHS | cWW | |
| 13 | IL_7RQB_055 | 7RQB | 0.1662 | 1 | UAA/GAN | 1A | LSU rRNA | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | * | C | 1417 | G | 1418 | A | 1419 | G | 1421 | cWW | tWH | tHS | cWW | |
| 14 | IL_7RQB_052 | 7RQB | 0.1712 | 1 | UAA/GAN | 1A | LSU rRNA | C | 1351 | U | 1352 | A | 1353 | A | 1354 | G | 1355 | * | C | 1376 | G | 1377 | A | 1378 | G | 1380 | cWW | tWH | tHS | cWW | |
| 15 | IL_4V9F_052 | 4V9F | 0.2402 | 3 | UAA/GAN | 0 | LSU rRNA | C | 1456 | U | 1457 | A | 1458 | A | 1459 | G | 1460 | * | C | 1483 | G | 1484 | A | 1485 | G | 1489 | cWW | tWH | tHS | cWW | |
| 16 | IL_5TBW_063 | 5TBW | 0.2650 | 2 | UAA/GAN | 1 | LSU rRNA | C | 1532 | U | 1533 | A | 1534 | A | 1535 | G | 1536 | * | C | 1585 | G | 1586 | A | 1587 | G | 1590 | cWW | tWH | tHS | cWW | |
| 17 | IL_5TBW_048 | 5TBW | 0.2303 | 1 | UAA/GAN | 1 | LSU rRNA | U | 1167 | U | 1168 | A | 1169 | A | 1170 | G | 1171 | * | C | 1328 | U | 1329 | A | 1330 | A | 1332 | cWW | tWH | ntHW | cWW | |
| 18 | IL_7A0S_051 | 7A0S | 0.5499 | 1 | UAA/GAN variation | X | LSU rRNA | C | 1593 | U | 1594 | A | 1595 | A | 1596 | A | 1597 | * | U | 1431 | G | 1432 | A | 1433 | G | 1435 | ntWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*CGAAG | 6 |
| CGAAG*UUUUUG | 1 |
| GGUAG*UGUAC | 1 |
| AGAAG*UGGU | 1 |
| CGAAG*UUAG | 1 |
| UGCAC*GGGG | 1 |
| AUUAU*AGAAU | 1 |
| UUAAG*CGAGA | 1 |
| CUAAG*CGAUG | 1 |
| CUAAG*CGAAAUG | 1 |
| CUAAG*CGAAAG | 1 |
| UUAAG*CUAUA | 1 |
| CUAAA*UGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GAA | 6 |
| UAA*GAU | 2 |
| GAA*UUUU | 1 |
| GUA*GUA | 1 |
| GAA*GG | 1 |
| GAA*UA | 1 |
| GCA*GG | 1 |
| UUA*GAA | 1 |
| UAA*GAG | 1 |
| UAA*GAAAU | 1 |
| UAA*GAAA | 1 |
| UAA*UAU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UAA/GAN (16)
- UAA/GAN related (1)
- UAA/GAN variation (1)
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.36 | Max 0.77
Coloring options: