IL_56465.5

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-4	1-5	2-3
1	IL_2AW7_025	2AW7	0.5884	0		A	16S ribosomal RNA	U	458	A	459	*	U	472	U	473	G	474		cWW	cWW
2	IL_4A1B_073	4A1B	0.3900	0		1	26S RRNA	C	1694	A	1695	*	U	1802	U	1803	G	1804		cWW	cWW
3	IL_1VW3_093	1VW3	0.4092	0		A	21S ribosomal RNA	U	3161	U	3162	*	A	3242	A	3243	A	3244		ncWW	ncWW
4	IL_4A1B_018	4A1B	0.5416	0		1	26S RRNA	U	511	G	512	*	U	466	A	467	A	468		cWW	cWW
5	IL_1VW3_058	1VW3	0.5534	0		A	21S ribosomal RNA	U	1785	A	1786	*	U	1764	A	1765	A	1766		cWW	cWW
6	IL_3U5H_037	3U5H	0.4172	0		5	25S rRNA	C	969	A	970	*	U	1111	A	1112	G	1113		cWW	cWW
7	IL_4A1B_042	4A1B	0.4042	0		1	26S RRNA	C	994	A	995	*	U	1138	A	1139	G	1140		cWW	cWW
8	IL_4NVV_087	4NVV	0.4543	0		A	23S Ribosomal RNA	A	2465	G	2466	*	C	2510	C	2511	U	2512		cWW	cWW
9	IL_4IOA_085	4IOA	0.4161	0		X	LSU rRNA	A	2432	G	2433	*	C	2477	C	2478	U	2479		cWW	cWW
10	IL_2QBG_090	2QBG	0.2618	0		B	23S rRNA	A	2453	G	2454	*	C	2498	C	2499	U	2500		cWW	cWW
11	IL_4NVV_026	4NVV	0.1757	0		A	23S Ribosomal RNA	C	884	C	885	*	G	985	A	986	G	987		cWW	cWW
12	IL_4IOA_021	4IOA	0.1947	0	Single stack bend (H)	X	LSU rRNA	C	850	C	851	*	G	951	A	952	G	953		cWW	cWW
13	IL_2QBG_027	2QBG	0.2326	0		B	23S rRNA	C	837	C	838	*	G	940	A	941	G	942		cWW	cWW
14	IL_1S72_005	1S72	0.2038	0	Single stack bend (H)	0	LSU rRNA	C	153	C	154	*	G	182	A	183	G	184		cWW	cWW
15	IL_3U5H_004	3U5H	0.1817	0		5	25S rRNA	C	27	C	28	*	G	56	A	57	G	58		cWW	cWW
16	IL_4A1B_001	4A1B	0.1373	0		1	26S RRNA	C	25	C	26	*	G	54	A	55	G	56		cWW	cWW
17	IL_4IOA_005	4IOA	0.0000	0	Single stack bend (H)	X	LSU rRNA	C	160	U	161	*	A	189	A	190	G	191		cWW	cWW
18	IL_1VW3_010	1VW3	0.1681	0		A	21S ribosomal RNA	C	223	U	224	*	A	252	A	253	G	254		cWW	cWW
19	IL_2QBG_010	2QBG	0.1951	0		B	23S rRNA	C	183	C	184	*	G	212	A	213	G	214		cWW	cWW
20	IL_4NVV_005	4NVV	0.1800	0		A	23S Ribosomal RNA	C	172	C	173	*	G	201	A	202	G	203		cWW	cWW
21	IL_4IOA_056	4IOA	0.2810	0	Single stack bend (H)	X	LSU rRNA	C	1477	U	1478	*	A	1463	A	1464	G	1465	ncWW	cWW	cWW
22	IL_1S72_079	1S72	0.2361	0	Single stack bend (H)	0	LSU rRNA	C	2454	A	2455	*	U	2436	A	2437	G	2438		cWW	cWW
23	IL_2AW7_047	2AW7	0.2828	0		A	16S ribosomal RNA	C	998	C	999	*	G	1041	A	1042	G	1043		cWW	cWW
24	IL_1VW3_030	1VW3	0.3117	0		A	21S ribosomal RNA	G	817	U	818	*	A	807	A	808	C	809	ncWW	cWW	cWW
25	IL_2QBG_029	2QBG	0.4041	0		B	23S rRNA	U	850	C	851	*	G	926	A	927	A	928		cWW	cWW
26	IL_2AW7_024	2AW7	0.4171	0		A	16S ribosomal RNA	G	454	G	455	*	C	477	A	478	U	479		cWW	cWW
27	IL_1FJG_046	1FJG	0.4097	0		A	SSU rRNA	G	1127	C	1128	*	G	1143	G	1144	C	1145		ncWW	cWW
28	IL_3U5H_146	3U5H	0.3208	0		7	5S rRNA	C	29	G	30	*	C	47	U	48	G	49		cWW	cWW
29	IL_3U5H_009	3U5H	0.3116	0		5	25S rRNA	U	257	G	258	*	C	163	A	164	A	165		cWW	cWW
30	IL_2O3X_001	2O3X	0.3613	1	Stack and bulge	A+B	RNA (23-mer)	G	5	C	7	*	G	42	U	43	C	44		cWW	cWW
31	IL_1O9M_001	1O9M	0.3799	1		A+B	EUBACTERIAL A-SITE	G	1405	C	1407	*	G	1494	U	1495	C	1496		cWW	cWW
32	IL_4M30_001	4M30	0.3884	0		C+D	RNA12	U	28	A	2	*	U	25	U	26	A	27		cWW	cWW
33	IL_4IOA_046	4IOA	0.4993	1	Intercalated cWW (H)	X	LSU rRNA	U	1232	C	1234	*	G	1241	A	1242	G	1243		cWW	cWW
34	IL_2QBG_084	2QBG	0.5966	1		B	23S rRNA	C	2103	U	2105	*	A	2184	U	2185	G	2186		cWW	cWW
35	IL_4IOA_102	4IOA	0.7491	2	Decoding loop related (H)	X	LSU rRNA	G	2846	C	2849	*	G	2818	G	2819	C	2820		cWW	cWW
36	IL_1ZX7_001	1ZX7	0.4895	2		A+B	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
37	IL_1ZX7_007	1ZX7	0.5542	2		G+H	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
38	IL_2O3X_003	2O3X	0.5754	2	Decoding loop related	A+B	RNA (23-mer)	G	16	G	19	*	C	30	A	31	C	32		cWW	cWW
39	IL_1DUH_005	1DUH	0.7500	4		A	4.5S RNA DOMAIN IV	U	38\|\|\|\|4_555	G	43\|\|\|\|4_555	*	C	66	A	67	A	68		cWW	cWW
40	IL_1DUH_001	1DUH	0.7500	4		A	4.5S RNA DOMAIN IV	U	38	G	43	*	C	66\|\|\|\|4_555	A	67\|\|\|\|4_555	A	68\|\|\|\|4_555		cWW	cWW
41	IL_1T0E_001	1T0E	0.6309	2	Decoding loop related	A+C	RNA (18-mer) + RNA (17-mer)	G	7	G	10\|\|A	*	C	16	A	17	C	18		cWW	cWW
42	IL_1O9M_002	1O9M	0.7424	2		B+A	EUBACTERIAL A-SITE	G	1491	G	1494	*	C	1407	A	1408	C	1409		cWW	cWW
43	IL_2O3X_002	2O3X	0.7253	2	Decoding loop related	B+A	RNA (23-mer)	G	39	G	42	*	C	7	A	8	C	9		cWW	cWW
44	IL_1MWL_003	1MWL	0.7170	2		A+B	RNA (22-mer)	G	15	G	18\|\|A	*	C	28	A	29	C	30		cWW	cWW
45	IL_1MWL_002	1MWL	0.7243	2		B+A	RNA (22-mer)	G	37	G	40	*	C	6	A	7	C	8		cWW	cWW
46	IL_3TD1_005	3TD1	0.8060	2		A+B	RNA (23-mer)	G	16	G	19	*	C	30	G	31	C	32		cWW	cWW
47	IL_3TD1_002	3TD1	0.7777	2		B+A	RNA (23-mer)	G	39	G	42	*	C	7	G	8	C	9		cWW	cWW
48	IL_3T4B_001	3T4B	0.5196	1		A	HCV IRES pseudoknot domain plus crystallization module	G	135	G	137	*	U	287	A	288	C	289		cWW	cWW
49	IL_4A1B_009	4A1B	0.5238	0		1	26S RRNA	U	245	G	246	*	U	173	A	174	A	175		ncWW	cWW
50	IL_3MOJ_004	3MOJ	0.5173	0	Single stack bend	A	LSU rRNA	U	2522	G	2523	*	C	2540	A	2541	A	2542		cWW	cWW
51	IL_2QWY_002	2QWY	0.5972	0		A	SAM-II riboswitch	U	21	G	22	*	C	43	U	44	A	45		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAG	9
GAAG*CAC	8
CA*UAG	3
AG*CCU	3
CU*AAG	3
UG*UAA	2
UG*CAA	2
GUC*GUC	2
GAAG*CGC	2
UA*UUG	1
CA*UUG	1
UU*AAA	1
UA*UAA	1
GU*AAC	1
UC*GAA	1
GG*CAU	1
GC*GGC	1
CG*CUG	1
UA*UUA	1
UAC*GAG	1
CCU*AUG	1
GGAC*GGC	1
CAA*UACCAG	1
UACCAG*CAA	1
GAG*UAC	1
UG*CUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	24
AA*A	8
*U	5
*C	3
U*U	2
A*A	2
AA*G	2
*G	1
C*U	1
GA*G	1
A*ACCA	1
ACCA*A	1

Release history

Release	1.14
Date	2014-04-27
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_56465.5	Only in the parent motif
IL_56465.4 Compare	IL_2QBG_084, IL_3U5H_009, IL_4IOA_056, IL_2QBG_029, IL_3TD1_005, IL_3TD1_002, IL_3U5H_004, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_4A1B_018, IL_2QBG_027, IL_3U5H_146, IL_2AW7_025, IL_1DUH_005, IL_1S72_005, IL_2O3X_001, IL_4A1B_042, IL_4A1B_073, IL_1O9M_001, IL_4IOA_085, IL_2QBG_090, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_2AW7_047, IL_1ZX7_001, IL_3U5H_037, IL_3MOJ_004, IL_4A1B_001, IL_4IOA_102, IL_1S72_079, IL_4IOA_005, IL_2QBG_010, IL_4IOA_021, IL_4IOA_046, IL_4A1B_009, IL_2O3X_002, IL_2AW7_024, IL_2O3X_003, IL_1T0E_001, IL_1DUH_001, IL_3T4B_001, IL_4M30_001	IL_4NVV_087, IL_1VW3_058, IL_1VW3_093, IL_4NVV_005, IL_1VW3_030, IL_4NVV_026, IL_1VW3_010	IL_3V2F_024, IL_3V2F_088, IL_3V2F_005

Children motifs

Child motif	Common motif instances	Only in IL_56465.5	Only in the child motif
IL_56465.6 Compare	IL_2QBG_084, IL_3TD1_002, IL_4IOA_056, IL_1DUH_005, IL_3U5H_009, IL_3U5H_004, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_4A1B_018, IL_2QBG_027, IL_3U5H_146, IL_2AW7_025, IL_2QBG_029, IL_1S72_005, IL_4NVV_005, IL_4A1B_073, IL_4NVV_026, IL_1O9M_001, IL_4IOA_085, IL_2QBG_090, IL_1MWL_003, IL_4NVV_087, IL_1MWL_002, IL_4IOA_021, IL_1ZX7_007, IL_1VW3_093, IL_2AW7_047, IL_1ZX7_001, IL_3U5H_037, IL_3MOJ_004, IL_4A1B_001, IL_4IOA_102, IL_1S72_079, IL_4IOA_005, IL_2QBG_010, IL_4A1B_042, IL_4IOA_046, IL_1VW3_010, IL_4A1B_009, IL_2O3X_002, IL_2AW7_024, IL_1VW3_058, IL_2O3X_003, IL_1T0E_001, IL_1VW3_030, IL_1DUH_001, IL_2O3X_001, IL_3T4B_001, IL_4M30_001	IL_3TD1_005	IL_4CUV_010, IL_4CUV_004, IL_4CUV_153, IL_4CUV_088
IL_01080.2 Compare	IL_3TD1_005	IL_2QBG_084, IL_3TD1_002, IL_4IOA_056, IL_1DUH_005, IL_3U5H_009, IL_3U5H_004, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_4A1B_018, IL_2QBG_027, IL_3U5H_146, IL_2AW7_025, IL_2QBG_029, IL_1S72_005, IL_4NVV_005, IL_4A1B_073, IL_4NVV_026, IL_1O9M_001, IL_4IOA_085, IL_2QBG_090, IL_1MWL_003, IL_4NVV_087, IL_1MWL_002, IL_4IOA_021, IL_1ZX7_007, IL_1VW3_093, IL_2AW7_047, IL_1ZX7_001, IL_3U5H_037, IL_3MOJ_004, IL_4A1B_001, IL_4IOA_102, IL_1S72_079, IL_4IOA_005, IL_2QBG_010, IL_4A1B_042, IL_4IOA_046, IL_1VW3_010, IL_4A1B_009, IL_2O3X_002, IL_2AW7_024, IL_1VW3_058, IL_2O3X_003, IL_1T0E_001, IL_1VW3_030, IL_1DUH_001, IL_2O3X_001, IL_3T4B_001, IL_4M30_001	IL_2PXV_001, IL_1FJG_057, IL_1S72_016, IL_2AW7_068

Motif IL_56465.5 Version IL_56465.5 of this group appears in releases 1.14 to 1.14 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_56465.5 Version IL_56465.5 of this group appears in releases 1.14 to 1.14

Download

Csv

Json