#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-6
1 IL_3IGI_0023IGI0.24990Triple shearedAGroup IIC intronG113G114A115C116G117*C70U71A72A73C74cWWtSHntHScWW
2 IL_4YAZ_0064YAZ0.34490Triple shearedRCyclic di-GMP-I riboswitchG35G36G37C38G39*U16A17A18A19C20cWWtSHntHScWW
3 IL_3MXH_0023MXH0.31350Triple shearedRc-di-GMP riboswitchG41G42A43C44G45*C22A23A24A25C26cWWtSHntHScWW
4 IL_3IWN_0023IWN0.33390Triple shearedAC-di-GMP riboswitchG31G32A33C34G35*C12A13A14A15C16cWWtSHntHScWW
5 IL_4WF9_0244WF90.39310Triple shearedX LSU rRNAU769G770G771A772G773*U748G749A750A751G752cWWtSHtSHcWW
6 IL_8C3A_0338C3A0.41410Triple sheared1 LSU rRNAU851G852G853A854G855*U830G831A832A833G834cWWtSHtSHtHScWW
7 IL_5TBW_0305TBW0.42710Triple sheared1 LSU rRNAU855G856G857A858G859*U834G835A836A837G838cWWtSHtSHtHScWW
8 IL_5J7L_2635J7L0.38620Triple shearedDA LSU rRNAU724G725G726A727G728*U703G704A705A706G707cWWtSHtSHtHScWW
9 IL_8VTW_0208VTW0.39490Triple sheared1A LSU rRNAU724G725G726A727G728*U703G704A705A706G707cWWtSHtSHtHScWW
10 IL_4V9F_0274V9F0.38260Triple sheared0 LSU rRNAU815G816G817A818A819*U794G795A796A797G798cWWtSHtSHntHScWW
11 IL_8C3A_0738C3A0.33340Triple sheared1 LSU rRNAA1802G1803G1804A1805A1806*U1641G1642A1643A1644U1645cWWtSHntSHtHScWW
12 IL_5TBW_0675TBW0.28550Triple sheared1 LSU rRNAA1806G1807G1808A1809A1810*U1645G1646A1647A1648U1649cWWtSHtSHtHScWW
13 IL_8VTW_0948VTW0.36420Triple sheared (H)1A LSU rRNAC2466C2467G2468A2469G2470*C2480G2481G2482C2483G2484cWWcWBtHScWW
14 IL_7A0S_0877A0S0.34100Triple shearedX LSU rRNAC2445C2446G2447A2448G2449*C2459G2460G2461C2462G2463cWWncWBtHScWW
15 IL_5TBW_1065TBW0.33630Triple sheared1 LSU rRNAU2835C2836A2837A2838G2839*C2849G2850A2851C2852A2853cWWntSHtHScWW
16 IL_5J7L_3385J7L0.29500Triple shearedDA LSU rRNAC2466C2467A2468A2469G2470*C2480G2481A2482C2483G2484cWWcWBntSHtHScWW
17 IL_4WF9_0934WF90.34390Triple shearedX LSU rRNAC2493C2494A2495A2496G2497*C2507G2508A2509C2510G2511cWWcWBtSHntHScWW
18 IL_4V9F_0854V9F0.37090Triple sheared0 LSU rRNAG2501C2502A2503A2504G2505*C2515G2516A2517C2518C2519cWWcWBntSHtHScWW
19 IL_5J7L_0565J7L0.46320Triple shearedAA SSU rRNAG1272C1273A1274A1275G1276*C1259G1260A1261C1262C1263cWWncWBtSHtHScWW
20 IL_7A0S_0707A0S0.35490Triple shearedX LSU rRNAU1848G1849G1850A1851G1852*C1865G1866A1867A1868A1869cWWtSHntHScWW
21 IL_2A64_0062A640.28690Triple shearedAribonuclease P RNAC347G348G349A350G351*C378G379A380A381G382cWWtSHtSHcWW
22 IL_2A64_0052A640.18730Triple shearedAribonuclease P RNAC297G298G299A300G301*C284G285A286A287G288cWWtSHntSHtHScWW
23 IL_8C3A_4808C3A0.11770Triple shearedCM SSU rRNAC1665G1666G1667A1668U1669*A1706G1707A1708A1709G1710cWWtSHntSHntWScWW
24 IL_4V88_4744V880.00000Triple shearedA6 SSU rRNAA1678G1679G1680A1681U1682*A1719G1720A1721A1722U1723cWWtSHtSHcWW
25 IL_8VTW_0748VTW0.16340Triple sheared1A LSU rRNAG1856G1857G1858A1859G1860*C1882G1883A1884A1885C1886cWWtSHtSHtHScWW
26 IL_5J7L_2745J7L0.28550Triple shearedDA LSU rRNAG875C876A877A878G879*C898A899A900C901C902cWWcWBntSHtHScWW
27 IL_4WFL_0014WFL0.22190Triple shearedA LSRP RNAU72C73G74A75G76*C91G92A93C94A95cWWcWBtSHtHScWW
28 IL_1U6B_0021U6B0.34980Triple shearedB197-MERG84C85A86A87C88*G56A57A58A59C60cWWncWWtSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGGAG*UGAAG5
GGACG*CAAAC2
AGGAA*UGAAU2
CCGAG*CGGCG2
CCAAG*CGACG2
GCAAG*CGACC2
CGGAG*CGAAG2
GGACG*CUAAC1
GGGCG*UAAAC1
UGGAA*UGAAG1
UCAAG*CGACA1
UGGAG*CGAAA1
CGGAU*AGAAG1
AGGAU*AGAAU1
GGGAG*CGAAC1
GCAAG*CAACC1
UCGAG*CGACA1
GCAAC*GAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
GGA*GAA14
CAA*GAC5
GAC*AAA2
CGA*GGC2
GAC*UAA1
GGC*AAA1
CAA*AAC1
CGA*GAC1
CAA*AAA1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Triple sheared (27)
  • Triple sheared (H) (1)
  • Basepair signature
    cWW-tSH-tSH-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.34 | Max 0.62
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