Motif IL_56467.9 Version IL_56467.9 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_3IGI_002	3IGI	0.2499	Triple sheared	A	Group IIC intron	G	113	G	114	A	115	C	116	G	117	*	C	70	U	71	A	72	A	73	C	74	cWW	tSH		ntHS	cWW
2	IL_4YAZ_006	4YAZ	0.3449	Triple sheared	R	Cyclic di-GMP-I riboswitch	G	35	G	36	G	37	C	38	G	39	*	U	16	A	17	A	18	A	19	C	20	cWW	tSH		ntHS	cWW
3	IL_3MXH_002	3MXH	0.3135	Triple sheared	R	c-di-GMP riboswitch	G	41	G	42	A	43	C	44	G	45	*	C	22	A	23	A	24	A	25	C	26	cWW	tSH		ntHS	cWW
4	IL_3IWN_002	3IWN	0.3339	Triple sheared	A	C-di-GMP riboswitch	G	31	G	32	A	33	C	34	G	35	*	C	12	A	13	A	14	A	15	C	16	cWW	tSH		ntHS	cWW
5	IL_4WF9_024	4WF9	0.3931	Triple sheared	X	LSU rRNA	U	769	G	770	G	771	A	772	G	773	*	U	748	G	749	A	750	A	751	G	752	cWW	tSH	tSH		cWW
6	IL_8C3A_033	8C3A	0.4141	Triple sheared	1	LSU rRNA	U	851	G	852	G	853	A	854	G	855	*	U	830	G	831	A	832	A	833	G	834	cWW	tSH	tSH	tHS	cWW
7	IL_5TBW_030	5TBW	0.4271	Triple sheared	1	LSU rRNA	U	855	G	856	G	857	A	858	G	859	*	U	834	G	835	A	836	A	837	G	838	cWW	tSH	tSH	tHS	cWW
8	IL_5J7L_263	5J7L	0.3862	Triple sheared	DA	LSU rRNA	U	724	G	725	G	726	A	727	G	728	*	U	703	G	704	A	705	A	706	G	707	cWW	tSH	tSH	tHS	cWW
9	IL_8VTW_020	8VTW	0.3949	Triple sheared	1A	LSU rRNA	U	724	G	725	G	726	A	727	G	728	*	U	703	G	704	A	705	A	706	G	707	cWW	tSH	tSH	tHS	cWW
10	IL_4V9F_027	4V9F	0.3826	Triple sheared	0	LSU rRNA	U	815	G	816	G	817	A	818	A	819	*	U	794	G	795	A	796	A	797	G	798	cWW	tSH	tSH	ntHS	cWW
11	IL_8C3A_073	8C3A	0.3334	Triple sheared	1	LSU rRNA	A	1802	G	1803	G	1804	A	1805	A	1806	*	U	1641	G	1642	A	1643	A	1644	U	1645	cWW	tSH	ntSH	tHS	cWW
12	IL_5TBW_067	5TBW	0.2855	Triple sheared	1	LSU rRNA	A	1806	G	1807	G	1808	A	1809	A	1810	*	U	1645	G	1646	A	1647	A	1648	U	1649	cWW	tSH	tSH	tHS	cWW
13	IL_8VTW_094	8VTW	0.3642	Triple sheared (H)	1A	LSU rRNA	C	2466	C	2467	G	2468	A	2469	G	2470	*	C	2480	G	2481	G	2482	C	2483	G	2484	cWW	cWB		tHS	cWW
14	IL_7A0S_087	7A0S	0.3410	Triple sheared	X	LSU rRNA	C	2445	C	2446	G	2447	A	2448	G	2449	*	C	2459	G	2460	G	2461	C	2462	G	2463	cWW	ncWB		tHS	cWW
15	IL_5TBW_106	5TBW	0.3363	Triple sheared	1	LSU rRNA	U	2835	C	2836	A	2837	A	2838	G	2839	*	C	2849	G	2850	A	2851	C	2852	A	2853	cWW		ntSH	tHS	cWW
16	IL_5J7L_338	5J7L	0.2950	Triple sheared	DA	LSU rRNA	C	2466	C	2467	A	2468	A	2469	G	2470	*	C	2480	G	2481	A	2482	C	2483	G	2484	cWW	cWB	ntSH	tHS	cWW
17	IL_4WF9_093	4WF9	0.3439	Triple sheared	X	LSU rRNA	C	2493	C	2494	A	2495	A	2496	G	2497	*	C	2507	G	2508	A	2509	C	2510	G	2511	cWW	cWB	tSH	ntHS	cWW
18	IL_4V9F_085	4V9F	0.3709	Triple sheared	0	LSU rRNA	G	2501	C	2502	A	2503	A	2504	G	2505	*	C	2515	G	2516	A	2517	C	2518	C	2519	cWW	cWB	ntSH	tHS	cWW
19	IL_5J7L_056	5J7L	0.4632	Triple sheared	AA	SSU rRNA	G	1272	C	1273	A	1274	A	1275	G	1276	*	C	1259	G	1260	A	1261	C	1262	C	1263	cWW	ncWB	tSH	tHS	cWW
20	IL_7A0S_070	7A0S	0.3549	Triple sheared	X	LSU rRNA	U	1848	G	1849	G	1850	A	1851	G	1852	*	C	1865	G	1866	A	1867	A	1868	A	1869	cWW	tSH		ntHS	cWW
21	IL_2A64_006	2A64	0.2869	Triple sheared	A	ribonuclease P RNA	C	347	G	348	G	349	A	350	G	351	*	C	378	G	379	A	380	A	381	G	382	cWW	tSH	tSH		cWW
22	IL_2A64_005	2A64	0.1873	Triple sheared	A	ribonuclease P RNA	C	297	G	298	G	299	A	300	G	301	*	C	284	G	285	A	286	A	287	G	288	cWW	tSH	ntSH	tHS	cWW
23	IL_8C3A_480	8C3A	0.1177	Triple sheared	CM	SSU rRNA	C	1665	G	1666	G	1667	A	1668	U	1669	*	A	1706	G	1707	A	1708	A	1709	G	1710	cWW	tSH	ntSH	ntWS	cWW
24	IL_4V88_474	4V88	0.0000	Triple sheared	A6	SSU rRNA	A	1678	G	1679	G	1680	A	1681	U	1682	*	A	1719	G	1720	A	1721	A	1722	U	1723	cWW	tSH	tSH		cWW
25	IL_8VTW_074	8VTW	0.1634	Triple sheared	1A	LSU rRNA	G	1856	G	1857	G	1858	A	1859	G	1860	*	C	1882	G	1883	A	1884	A	1885	C	1886	cWW	tSH	tSH	tHS	cWW
26	IL_5J7L_274	5J7L	0.2855	Triple sheared	DA	LSU rRNA	G	875	C	876	A	877	A	878	G	879	*	C	898	A	899	A	900	C	901	C	902	cWW	cWB	ntSH	tHS	cWW
27	IL_4WFL_001	4WFL	0.2219	Triple sheared	A	LSRP RNA	U	72	C	73	G	74	A	75	G	76	*	C	91	G	92	A	93	C	94	A	95	cWW	cWB	tSH	tHS	cWW
28	IL_1U6B_002	1U6B	0.3498	Triple sheared	B	197-MER	G	84	C	85	A	86	A	87	C	88	*	G	56	A	57	A	58	A	59	C	60	cWW	ncWW	tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGGAG*UGAAG	5
GGACG*CAAAC	2
AGGAA*UGAAU	2
CCGAG*CGGCG	2
CCAAG*CGACG	2
GCAAG*CGACC	2
CGGAG*CGAAG	2
GGACG*CUAAC	1
GGGCG*UAAAC	1
UGGAA*UGAAG	1
UCAAG*CGACA	1
UGGAG*CGAAA	1
CGGAU*AGAAG	1
AGGAU*AGAAU	1
GGGAG*CGAAC	1
GCAAG*CAACC	1
UCGAG*CGACA	1
GCAAC*GAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGA*GAA	14
CAA*GAC	5
GAC*AAA	2
CGA*GGC	2
GAC*UAA	1
GGC*AAA	1
CAA*AAC	1
CGA*GAC	1
CAA*AAA	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared (27)
Triple sheared (H) (1)
Basepair signature: cWW-tSH-tSH-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.34 | Max 0.62

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