Motif IL_63596.3 Version IL_63596.3 of this group appears in releases 3.54 to 3.61

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7	1-3	1-7	2-4	2-6	3-7	4-7	5-6
1	IL_7A0S_047	7A0S	0.3739	1	C-loop	X	LSU rRNA	G	1332	G	1333	A	1334	A	1335	G	1336	*	C	1344	C	1346		cWW				cWS	cWW
2	IL_5J7L_272	5J7L	0.2381	2	C-loop	DA	LSU rRNA	G	864	C	865	A	866	C	867	U	868	*	A	909	C	912		cWW	cSH	tWH		cWS	cWW
3	IL_4V9F_051	4V9F	0.2572	1	C-loop	0	LSU rRNA	G	1425	C	1426	A	1427	C	1428	U	1429	*	A	1437	C	1439		cWW	cSH	tWH		cWS	cWW
4	IL_7RQB_051	7RQB	0.2415	1	C-loop	1A	LSU rRNA	G	1319	C	1320	A	1321	A	1322	U	1323	*	A	1331	C	1333		cWW	ncSH	tWH		cWS	cWW
5	IL_4V9F_093	4V9F	0.2285	1	C-loop	0	LSU rRNA	C	2717	C	2718	A	2719	C	2720	U	2721	*	A	2761	G	2763		cWW	cSH	tWH		cWS	cWW
6	IL_5B2P_003	5B2P	0.1507	1	C-loop	B	Guide RNA	C	76	C	77	U	78	C	79	U	80	*	A	88	G	90		cWW	cSH	tWH	tHS	cWS	cWW
7	IL_4JRC_003	4JRC	0.1424	1	C-loop	B	Distal Stem I region of the glyQS T box leader RNA	C	29	C	30	U	31	C	32	U	33	*	A	73	G	75		cWW	cSH	tWH	tHS	cWS	cWW
8	IL_7A0S_095	7A0S	0.1141	1	C-loop	X	LSU rRNA	C	2659	C	2660	G	2661	C	2662	U	2663	*	A	2705	G	2707		cWW	ncSH	tWH		cWS	cWW
9	IL_5J7L_347	5J7L	0.0000	1	C-loop	DA	LSU rRNA	U	2680	C	2681	A	2682	C	2683	U	2684	*	A	2725	A	2727	ncSH	cWW	cSH	tWH		cWS	cWW
10	IL_7RQB_104	7RQB	0.1152	1	C-loop	1A	LSU rRNA	C	2680	C	2681	U	2682	C	2683	U	2684	*	A	2725	G	2727		cWW	cSH	tWH	tHS	cWS	cWW
11	IL_4WF9_101	4WF9	0.1269	1	C-loop	X	LSU rRNA	C	2707	C	2708	U	2709	C	2710	U	2711	*	A	2752	G	2754		cWW	ncSH	tWH	ntHS	cWS	cWW
12	IL_4MGN_001	4MGN	0.1486	1	C-loop	A	glyQS T box riboswitch	C	29	C	30	U	31	C	32	U	33	*	A	73	G	75		cWW	ncSH	ntWH	ntHS	cWS	cWW
13	IL_1KOG_007	1KOG	0.1431	1	C-loop	O	Threonyl-tRNA synthetase mRNA	C	96	C	97	A	98	C	99	U	100	*	A	74	G	76	ncSH	cWW	cSH	tWH		cWS	cWW
14	IL_1KOG_009	1KOG	0.1431	1	C-loop	O	Threonyl-tRNA synthetase mRNA	C	96\|\|\|\|2_555	C	97\|\|\|\|2_555	A	98\|\|\|\|2_555	C	99\|\|\|\|2_555	U	100\|\|\|\|2_555	*	A	74\|\|\|\|2_555	G	76\|\|\|\|2_555	ncSH	cWW	cSH	tWH		cWS	cWW
15	IL_4V88_443	4V88	0.1602	2	C-loop	A6	SSU rRNA	U	1617	C	1618	C	1619	C	1620	U	1621	*	A	1157	A	1160	ncSH	cWW	ncSH	tWH		cWS	cWW
16	IL_6JDV_004	6JDV	0.2934	1	C-loop	B	CRISPR RNA direct repeat element	G	105	C	106	U	107	C	108	U	109	*	A	138	C	140	ncSH	cWW		tWH		cWS	cWW
17	IL_5TBW_040	5TBW	0.4047	3	C-loop	1	LSU rRNA	G	999	C	1000	A	1002	A	1003	U	1004	*	A	1046	C	1049		cWW		tWH		cWS	cWW
18	IL_7RQB_029	7RQB	0.3419	2	C-loop	1A	LSU rRNA	G	864	C	865	A	866	C	867	U	868	*	A	909	C	912	tSW	cWW	cSH	tWH		cWS	cWW
19	IL_4WF9_033	4WF9	0.3350	2	C-loop	X	LSU rRNA	G	909	C	910	A	911	C	912	U	913	*	A	954	C	957	tSW	cWW	cSH	tWH		cWS	cWW
20	IL_7A0S_029	7A0S	0.3548	2	C-loop	X	LSU rRNA	G	877	C	878	A	879	C	880	U	881	*	A	921	C	924	ntSW	cWW	ncSH	tWH		cWS	cWW
21	IL_4LFB_015	4LFB	0.3462	0	C-loop	A	SSU rRNA	G	371	C	372	A	373	A	374	U	375	*	A	389	C	390		cWW		ntWH		cWS	cWW
22	IL_6CZR_127	6CZR	0.2955	0	C-loop	1a	SSU rRNA	G	367	C	368	A	369	A	370	U	371	*	A	385	C	386		cWW		tWH		cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCACU*AAAC	4
CCUCU*ACG	3
CCUCU*AUG	2
CCACU*AUG	2
GCAAU*AC	2
GGAAG*CGC	1
GCACU*AGC	1
GCAAU*AGC	1
CCACU*ACG	1
CCGCU*AUG	1
UCACU*AAA	1
UCCCU*ACCA	1
GCUCU*AUC	1
GCGAAU*AAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAC*AA	4
CUC*C	3
CUC*U	3
CAC*U	2
CAA*	2
GAA*G	1
CAC*G	1
CAA*G	1
CAC*C	1
CGC*U	1
CAC*A	1
CCC*CC	1
CGAA*AA	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: C-loop (22)
Basepair signature: cWW-tWH-cSH-L-cWS-cWW
Heat map statistics: Min 0.10 | Avg 0.29 | Max 0.54

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