Motif IL_70108.1 Version IL_70108.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4TZZ_005 | 4TZZ | 0.5288 | 8 | C | T-box leader | G | 69 | G | 70 | A | 71 | U | 72 | * | A | 36 | U | 37 | G | 38 | C | 47 | cWW | cWH | ncWW | cWW | |
| 2 | IL_4CUV_105 | 4CUV | 0.0000 | 9 | 1 | 25S RRNA | C | 2493 | C | 2494 | U | 2495 | U | 2496 | * | A | 2450 | U | 2451 | G | 2452 | G | 2462 | cWW | ncWW | cWW | ||
| 3 | IL_3J7A_035 | 3J7A | 0.5940 | 1 | A | SSU rRNA | U | 877 | G | 878 | A | 879 | A | 880 | * | U | 922 | U | 923 | C | 925 | G | 926 | ncWW | ncWW | ncWW | ||
| 4 | IL_1S72_037 | 1S72 | 0.5738 | 0 | 0 | LSU rRNA | C | 1000 | U | 1001 | G | 1002 | U | 1003 | * | A | 965 | U | 966 | U | 967 | G | 968 | cWW | cwW | cWS | cWW | |
| 5 | IL_4CUX_095 | 4CUX | 0.7664 | 0 | 2 | 18S RRNA | C | 1711 | A | 1712 | G | 1713 | A | 1714 | * | U | 1687 | U | 1688 | A | 1689 | G | 1690 | cWW | ncWS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAU*AUGAUUAGCGAC | 1 |
| CCUU*AUGCGUAGGAUAG | 1 |
| UGAA*UUACG | 1 |
| CUGU*AUUG | 1 |
| CAGA*UUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*UGAUUAGCGA | 1 |
| CU*UGCGUAGGAUA | 1 |
| GA*UAC | 1 |
| UG*UU | 1 |
| AG*UA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70108.1 | Only in the parent motif |
|---|---|---|---|
| IL_67399.1 Compare | IL_3J7A_035, IL_1S72_037 | IL_4TZZ_005, IL_4CUV_105, IL_4CUX_095 | IL_1VX2_043, IL_2Y9B_002, IL_1VWW_106, IL_4BPP_084 |
| IL_65681.1 Compare | IL_4CUX_095 | IL_4TZZ_005, IL_4CUV_105, IL_3J7A_035, IL_1S72_037 | |
| IL_72062.1 Compare | IL_4CUV_105 | IL_4TZZ_005, IL_4CUX_095, IL_3J7A_035, IL_1S72_037 | IL_2FQN_003, IL_2OE5_002, IL_4CUV_048, IL_1VX6_048 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-R-R-L-cWW
- Heat map statistics
- Min 0.53 | Avg 0.58 | Max 0.91
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