Motif IL_67582.1 Version IL_67582.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2PXV_002 | 2PXV | 0.1647 | 0 | B | 4.5 S RNA | U | 146 | C | 147 | A | 148 | G | 149 | G | 150 | U | 151 | * | A | 160 | A | 161 | G | 162 | C | 163 | A | 164 | G | 165 | cWW | ntWH | tSH | tHW | tHS | cWW | cWW | |
| 2 | IL_1LNT_002 | 1LNT | 0.0000 | 0 | tSH-tHW-tHS-cWW | A+B | RNA (12-mer) | U | 4 | C | 5 | A | 6 | G | 7 | G | 8 | U | 9 | * | A | 16 | A | 17 | G | 18 | C | 19 | A | 20 | G | 21 | cWW | tSH | tHW | tHS | cWW | cWW | |
| 3 | IL_1MFQ_007 | 1MFQ | 0.1596 | 0 | tSH-tHW-tHS-cWW | A | SRP RNA | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | * | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | cWW | tWH | ntSH | tHW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAGGU*AAGCAG | 2 |
| CCAGGU*GAGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGG*AGCA | 3 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_67582.1 | Only in the parent motif |
|---|---|---|---|
| IL_92741.1 Compare | IL_2PXV_002, IL_1LNT_002 | IL_1MFQ_007 | IL_3G78_007, IL_1DUH_002, IL_1DUH_004, IL_1L9A_008, IL_1D4R_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_67582.1 | Only in the child motif |
|---|---|---|---|
| IL_47444.1 Compare | IL_2PXV_002, IL_1LNT_002, IL_1MFQ_007 | IL_1DUH_002, IL_1DUH_004, IL_2XXA_008, IL_3G78_007, IL_3U5H_127, IL_2XXA_015, IL_1D4R_002 |
- Annotations
-
- tSH-tHW-tHS-cWW (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.16 | Avg 0.11 | Max 0.19
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