#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 12 131-41-132-113-103-124-95-86-7
1 IL_2QBG_0712QBG0.09123B23S rRNAU1798G1799C1800A1802A1803C1804*G1813G1814A1815G1817U1818A1819A1821cSscWWntSstWWtHHtHHtHScWW
2 IL_4IOA_0654IOA0.08663Kink-turn related (H)X LSU rRNAU1789G1790C1791A1793A1794C1795*G1805G1806A1807G1809U1810A1811A1813cSscWWntSsntWWntHHtHHtHScWW
3 IL_3V2F_0673V2F0.00003A23S Ribosomal RNAU1798G1799C1800A1802A1803C1804*G1813G1814A1815G1817U1818A1819A1821cSscWWtSstWWtHHtHHtHScWW
4 IL_1S72_0651S720.23803Kink-turn related (H)0 LSU rRNAC1854G1855C1856A1858A1859U1860*A1869C1870U1871G1873U1874A1875G1877cSscWWtSstWWtHHtHHncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGCAAAC*GGACGUAUA1
UGCCAAC*GGACGUAUA1
UGCGAAC*GGAGGUAUA1
CGCAAAU*ACUCGUACG1
Non-Watson-Crick part of the motif
SequenceCounts
GCAAA*GACGUAU1
GCCAA*GACGUAU1
GCGAA*GAGGUAU1
GCAAA*CUCGUAC1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_98591.3Only in the parent motif
IL_98591.2
Compare
IL_2QBG_071, IL_1S72_065, IL_3V2F_067IL_4IOA_065IL_2ZJR_066

Children motifs

Child motifCommon motif instancesOnly in IL_98591.3Only in the child motif
IL_71229.1
Compare
IL_4IOA_065, IL_1S72_065, IL_2QBG_071IL_3V2F_067IL_1VW3_053, IL_4NVV_070
Annotations
  • Kink-turn related (H) (2)
  • (2)
  • Basepair signature
    cWW-cSS-R-tSS-tWW-tHH-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.13 | Max 0.27
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