#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 71-31-72-42-63-74-75-6
1 IL_4V9F_0934V9F0.22851C-loop0 LSU rRNAC2717C2718A2719C2720U2721*A2761G2763cWWcSHtWHcWScWW
2 IL_4Y4O_2794Y4O0.13691C-loop2A LSU rRNAC2680C2681U2682C2683U2684*A2725G2727cWWcSHtWHtHScWScWW
3 IL_5B2P_0035B2P0.15071C-loopBGuide RNAC76C77U78C79U80*A88G90cWWcSHtWHtHScWScWW
4 IL_4IOA_0974IOA0.12471C-loopX LSU rRNAC2659C2660G2661C2662U2663*A2705G2707cWWcSHtWHcWScWW
5 IL_5J7L_3475J7L0.00001C-loopDA LSU rRNAU2680C2681A2682C2683U2684*A2725A2727ncSHcWWcSHtWHcWScWW
6 IL_4JRC_0034JRC0.14241C-loopBDistal Stem I region of the glyQS T box leader RNAC29C30U31C32U33*A73G75cWWcSHtWHtHScWScWW
7 IL_4WF9_1014WF90.12691C-loopX LSU rRNAC2707C2708U2709C2710U2711*A2752G2754cWWncSHtWHntHScWScWW
8 IL_4MGN_0014MGN0.14861C-loopAglyQS T box riboswitchC29C30U31C32U33*A73G75cWWncSHntWHntHScWScWW
9 IL_1KOG_0071KOG0.14311C-loopOThreonyl-tRNA synthetase mRNAC96C97A98C99U100*A74G76ncSHcWWcSHtWHcWScWW
10 IL_1KOG_0091KOG0.14311C-loopOThreonyl-tRNA synthetase mRNAC96||||2_555C97||||2_555A98||||2_555C99||||2_555U100||||2_555*A74||||2_555G76||||2_555ncSHcWWcSHtWHcWScWW
11 IL_4V88_4434V880.16022C-loopA6 SSU rRNAU1617C1618C1619C1620U1621*A1157A1160ncSHcWWncSHtWHcWScWW
12 IL_4WF9_0334WF90.33502C-loopX LSU rRNAG909C910A911C912U913*A954C957tSWcWWcSHtWHcWScWW
13 IL_4IOA_0284IOA0.32072C-loopX LSU rRNAG877C878A879C880U881*A921C924tSWcWWcSHtWHcWScWW
14 IL_4Y4O_2064Y4O0.31332C-loop2A LSU rRNAG864C865A866C867U868*A909C912tSWcWWcSHtWHcWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCUCU*ACG3
GCACU*AAAC3
CCUCU*AUG2
CCACU*AUG2
CCACU*ACG1
CCGCU*AUG1
UCACU*AAA1
UCCCU*ACCA1
Non-Watson-Crick part of the motif
SequenceCounts
CUC*C3
CAC*AA3
CUC*U2
CAC*U2
CAC*C1
CGC*U1
CAC*A1
CCC*CC1

Release history

Release3.183.193.203.213.223.233.24
Date2019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-16
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • C-loop (14)
  • Basepair signature
    cWW-tSW-tWH-cSH-cWS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.22 | Max 0.50
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