RNA 3D Hub //

Motif IL_75892.3 Version IL_75892.3 of this group appears in releases 3.18 to 3.24

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 71-31-72-42-63-74-75-6
1 IL_4V9F_0934V9F0.22851C-loop0 LSU rRNAC2717C2718A2719C2720U2721*A2761G2763cWWcSHtWHcWScWW
2 IL_4Y4O_2794Y4O0.13691C-loop2A LSU rRNAC2680C2681U2682C2683U2684*A2725G2727cWWcSHtWHtHScWScWW
3 IL_5B2P_0035B2P0.15071C-loopBGuide RNAC76C77U78C79U80*A88G90cWWcSHtWHtHScWScWW
4 IL_4IOA_0974IOA0.12471C-loopX LSU rRNAC2659C2660G2661C2662U2663*A2705G2707cWWcSHtWHcWScWW
5 IL_5J7L_3475J7L0.00001C-loopDA LSU rRNAU2680C2681A2682C2683U2684*A2725A2727ncSHcWWcSHtWHcWScWW
6 IL_4JRC_0034JRC0.14241C-loopBDistal Stem I region of the glyQS T box leader RNAC29C30U31C32U33*A73G75cWWcSHtWHtHScWScWW
7 IL_4WF9_1014WF90.12691C-loopX LSU rRNAC2707C2708U2709C2710U2711*A2752G2754cWWncSHtWHntHScWScWW
8 IL_4MGN_0014MGN0.14861C-loopAglyQS T box riboswitchC29C30U31C32U33*A73G75cWWncSHntWHntHScWScWW
9 IL_1KOG_0071KOG0.14311C-loopOThreonyl-tRNA synthetase mRNAC96C97A98C99U100*A74G76ncSHcWWcSHtWHcWScWW
10 IL_1KOG_0091KOG0.14311C-loopOThreonyl-tRNA synthetase mRNAC96||||2_555C97||||2_555A98||||2_555C99||||2_555U100||||2_555*A74||||2_555G76||||2_555ncSHcWWcSHtWHcWScWW
11 IL_4V88_4434V880.16022C-loopA6 SSU rRNAU1617C1618C1619C1620U1621*A1157A1160ncSHcWWncSHtWHcWScWW
12 IL_4WF9_0334WF90.33502C-loopX LSU rRNAG909C910A911C912U913*A954C957tSWcWWcSHtWHcWScWW
13 IL_4IOA_0284IOA0.32072C-loopX LSU rRNAG877C878A879C880U881*A921C924tSWcWWcSHtWHcWScWW
14 IL_4Y4O_2064Y4O0.31332C-loop2A LSU rRNAG864C865A866C867U868*A909C912tSWcWWcSHtWHcWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCUCU*ACG3
GCACU*AAAC3
CCUCU*AUG2
CCACU*AUG2
CCACU*ACG1
CCGCU*AUG1
UCACU*AAA1
UCCCU*ACCA1
Non-Watson-Crick part of the motif
SequenceCounts
CUC*C3
CAC*AA3
CUC*U2
CAC*U2
CAC*C1
CGC*U1
CAC*A1
CCC*CC1

Release history

Release3.183.193.203.213.223.233.24
Date2019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-16
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • C-loop (14)
    • Basepair signature
    cWW-tSW-tWH-cSH-cWS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.22 | Max 0.50
    Help

    Coloring options:

    IL_4V9F_093:IL_4V9F_093 = 0IL_4V9F_093:IL_4Y4O_279 = 0.1729IL_4V9F_093:IL_5B2P_003 = 0.2248IL_4V9F_093:IL_4IOA_097 = 0.1819IL_4V9F_093:IL_5J7L_347 = 0.2285IL_4V9F_093:IL_4JRC_003 = 0.241IL_4V9F_093:IL_4WF9_101 = 0.1979IL_4V9F_093:IL_4MGN_001 = 0.2442IL_4V9F_093:IL_1KOG_007 = 0.2968IL_4V9F_093:IL_1KOG_009 = 0.2968IL_4V9F_093:IL_4V88_443 = 0.3171IL_4V9F_093:IL_4WF9_033 = 0.4972IL_4V9F_093:IL_4IOA_028 = 0.4739IL_4V9F_093:IL_4Y4O_206 = 0.4751IL_4Y4O_279:IL_4V9F_093 = 0.1729IL_4Y4O_279:IL_4Y4O_279 = 0IL_4Y4O_279:IL_5B2P_003 = 0.1236IL_4Y4O_279:IL_4IOA_097 = 0.1441IL_4Y4O_279:IL_5J7L_347 = 0.1369IL_4Y4O_279:IL_4JRC_003 = 0.144IL_4Y4O_279:IL_4WF9_101 = 0.1271IL_4Y4O_279:IL_4MGN_001 = 0.1798IL_4Y4O_279:IL_1KOG_007 = 0.1818IL_4Y4O_279:IL_1KOG_009 = 0.1818IL_4Y4O_279:IL_4V88_443 = 0.1922IL_4Y4O_279:IL_4WF9_033 = 0.3691IL_4Y4O_279:IL_4IOA_028 = 0.3485IL_4Y4O_279:IL_4Y4O_206 = 0.3523IL_5B2P_003:IL_4V9F_093 = 0.2248IL_5B2P_003:IL_4Y4O_279 = 0.1236IL_5B2P_003:IL_5B2P_003 = 0IL_5B2P_003:IL_4IOA_097 = 0.142IL_5B2P_003:IL_5J7L_347 = 0.1507IL_5B2P_003:IL_4JRC_003 = 0.1602IL_5B2P_003:IL_4WF9_101 = 0.186IL_5B2P_003:IL_4MGN_001 = 0.2209IL_5B2P_003:IL_1KOG_007 = 0.1852IL_5B2P_003:IL_1KOG_009 = 0.1852IL_5B2P_003:IL_4V88_443 = 0.1967IL_5B2P_003:IL_4WF9_033 = 0.3687IL_5B2P_003:IL_4IOA_028 = 0.3671IL_5B2P_003:IL_4Y4O_206 = 0.3619IL_4IOA_097:IL_4V9F_093 = 0.1819IL_4IOA_097:IL_4Y4O_279 = 0.1441IL_4IOA_097:IL_5B2P_003 = 0.142IL_4IOA_097:IL_4IOA_097 = 0IL_4IOA_097:IL_5J7L_347 = 0.1247IL_4IOA_097:IL_4JRC_003 = 0.1604IL_4IOA_097:IL_4WF9_101 = 0.1551IL_4IOA_097:IL_4MGN_001 = 0.1633IL_4IOA_097:IL_1KOG_007 = 0.19IL_4IOA_097:IL_1KOG_009 = 0.19IL_4IOA_097:IL_4V88_443 = 0.216IL_4IOA_097:IL_4WF9_033 = 0.4162IL_4IOA_097:IL_4IOA_028 = 0.4095IL_4IOA_097:IL_4Y4O_206 = 0.4043IL_5J7L_347:IL_4V9F_093 = 0.2285IL_5J7L_347:IL_4Y4O_279 = 0.1369IL_5J7L_347:IL_5B2P_003 = 0.1507IL_5J7L_347:IL_4IOA_097 = 0.1247IL_5J7L_347:IL_5J7L_347 = 0IL_5J7L_347:IL_4JRC_003 = 0.1424IL_5J7L_347:IL_4WF9_101 = 0.1269IL_5J7L_347:IL_4MGN_001 = 0.1486IL_5J7L_347:IL_1KOG_007 = 0.1431IL_5J7L_347:IL_1KOG_009 = 0.1431IL_5J7L_347:IL_4V88_443 = 0.1602IL_5J7L_347:IL_4WF9_033 = 0.335IL_5J7L_347:IL_4IOA_028 = 0.3207IL_5J7L_347:IL_4Y4O_206 = 0.3133IL_4JRC_003:IL_4V9F_093 = 0.241IL_4JRC_003:IL_4Y4O_279 = 0.144IL_4JRC_003:IL_5B2P_003 = 0.1602IL_4JRC_003:IL_4IOA_097 = 0.1604IL_4JRC_003:IL_5J7L_347 = 0.1424IL_4JRC_003:IL_4JRC_003 = 0IL_4JRC_003:IL_4WF9_101 = 0.1475IL_4JRC_003:IL_4MGN_001 = 0.1739IL_4JRC_003:IL_1KOG_007 = 0.182IL_4JRC_003:IL_1KOG_009 = 0.182IL_4JRC_003:IL_4V88_443 = 0.2219IL_4JRC_003:IL_4WF9_033 = 0.3821IL_4JRC_003:IL_4IOA_028 = 0.3699IL_4JRC_003:IL_4Y4O_206 = 0.3809IL_4WF9_101:IL_4V9F_093 = 0.1979IL_4WF9_101:IL_4Y4O_279 = 0.1271IL_4WF9_101:IL_5B2P_003 = 0.186IL_4WF9_101:IL_4IOA_097 = 0.1551IL_4WF9_101:IL_5J7L_347 = 0.1269IL_4WF9_101:IL_4JRC_003 = 0.1475IL_4WF9_101:IL_4WF9_101 = 0IL_4WF9_101:IL_4MGN_001 = 0.1372IL_4WF9_101:IL_1KOG_007 = 0.1857IL_4WF9_101:IL_1KOG_009 = 0.1857IL_4WF9_101:IL_4V88_443 = 0.1993IL_4WF9_101:IL_4WF9_033 = 0.3827IL_4WF9_101:IL_4IOA_028 = 0.3531IL_4WF9_101:IL_4Y4O_206 = 0.3643IL_4MGN_001:IL_4V9F_093 = 0.2442IL_4MGN_001:IL_4Y4O_279 = 0.1798IL_4MGN_001:IL_5B2P_003 = 0.2209IL_4MGN_001:IL_4IOA_097 = 0.1633IL_4MGN_001:IL_5J7L_347 = 0.1486IL_4MGN_001:IL_4JRC_003 = 0.1739IL_4MGN_001:IL_4WF9_101 = 0.1372IL_4MGN_001:IL_4MGN_001 = 0IL_4MGN_001:IL_1KOG_007 = 0.1872IL_4MGN_001:IL_1KOG_009 = 0.1872IL_4MGN_001:IL_4V88_443 = 0.2195IL_4MGN_001:IL_4WF9_033 = 0.387IL_4MGN_001:IL_4IOA_028 = 0.3676IL_4MGN_001:IL_4Y4O_206 = 0.3692IL_1KOG_007:IL_4V9F_093 = 0.2968IL_1KOG_007:IL_4Y4O_279 = 0.1818IL_1KOG_007:IL_5B2P_003 = 0.1852IL_1KOG_007:IL_4IOA_097 = 0.19IL_1KOG_007:IL_5J7L_347 = 0.1431IL_1KOG_007:IL_4JRC_003 = 0.182IL_1KOG_007:IL_4WF9_101 = 0.1857IL_1KOG_007:IL_4MGN_001 = 0.1872IL_1KOG_007:IL_1KOG_007 = 0IL_1KOG_007:IL_1KOG_009 = 0IL_1KOG_007:IL_4V88_443 = 0.1548IL_1KOG_007:IL_4WF9_033 = 0.2872IL_1KOG_007:IL_4IOA_028 = 0.2765IL_1KOG_007:IL_4Y4O_206 = 0.2885IL_1KOG_009:IL_4V9F_093 = 0.2968IL_1KOG_009:IL_4Y4O_279 = 0.1818IL_1KOG_009:IL_5B2P_003 = 0.1852IL_1KOG_009:IL_4IOA_097 = 0.19IL_1KOG_009:IL_5J7L_347 = 0.1431IL_1KOG_009:IL_4JRC_003 = 0.182IL_1KOG_009:IL_4WF9_101 = 0.1857IL_1KOG_009:IL_4MGN_001 = 0.1872IL_1KOG_009:IL_1KOG_007 = 0IL_1KOG_009:IL_1KOG_009 = 0IL_1KOG_009:IL_4V88_443 = 0.1548IL_1KOG_009:IL_4WF9_033 = 0.2872IL_1KOG_009:IL_4IOA_028 = 0.2765IL_1KOG_009:IL_4Y4O_206 = 0.2885IL_4V88_443:IL_4V9F_093 = 0.3171IL_4V88_443:IL_4Y4O_279 = 0.1922IL_4V88_443:IL_5B2P_003 = 0.1967IL_4V88_443:IL_4IOA_097 = 0.216IL_4V88_443:IL_5J7L_347 = 0.1602IL_4V88_443:IL_4JRC_003 = 0.2219IL_4V88_443:IL_4WF9_101 = 0.1993IL_4V88_443:IL_4MGN_001 = 0.2195IL_4V88_443:IL_1KOG_007 = 0.1548IL_4V88_443:IL_1KOG_009 = 0.1548IL_4V88_443:IL_4V88_443 = 0IL_4V88_443:IL_4WF9_033 = 0.2552IL_4V88_443:IL_4IOA_028 = 0.2654IL_4V88_443:IL_4Y4O_206 = 0.2612IL_4WF9_033:IL_4V9F_093 = 0.4972IL_4WF9_033:IL_4Y4O_279 = 0.3691IL_4WF9_033:IL_5B2P_003 = 0.3687IL_4WF9_033:IL_4IOA_097 = 0.4162IL_4WF9_033:IL_5J7L_347 = 0.335IL_4WF9_033:IL_4JRC_003 = 0.3821IL_4WF9_033:IL_4WF9_101 = 0.3827IL_4WF9_033:IL_4MGN_001 = 0.387IL_4WF9_033:IL_1KOG_007 = 0.2872IL_4WF9_033:IL_1KOG_009 = 0.2872IL_4WF9_033:IL_4V88_443 = 0.2552IL_4WF9_033:IL_4WF9_033 = 0IL_4WF9_033:IL_4IOA_028 = 0.1412IL_4WF9_033:IL_4Y4O_206 = 0.142IL_4IOA_028:IL_4V9F_093 = 0.4739IL_4IOA_028:IL_4Y4O_279 = 0.3485IL_4IOA_028:IL_5B2P_003 = 0.3671IL_4IOA_028:IL_4IOA_097 = 0.4095IL_4IOA_028:IL_5J7L_347 = 0.3207IL_4IOA_028:IL_4JRC_003 = 0.3699IL_4IOA_028:IL_4WF9_101 = 0.3531IL_4IOA_028:IL_4MGN_001 = 0.3676IL_4IOA_028:IL_1KOG_007 = 0.2765IL_4IOA_028:IL_1KOG_009 = 0.2765IL_4IOA_028:IL_4V88_443 = 0.2654IL_4IOA_028:IL_4WF9_033 = 0.1412IL_4IOA_028:IL_4IOA_028 = 0IL_4IOA_028:IL_4Y4O_206 = 0.1003IL_4Y4O_206:IL_4V9F_093 = 0.4751IL_4Y4O_206:IL_4Y4O_279 = 0.3523IL_4Y4O_206:IL_5B2P_003 = 0.3619IL_4Y4O_206:IL_4IOA_097 = 0.4043IL_4Y4O_206:IL_5J7L_347 = 0.3133IL_4Y4O_206:IL_4JRC_003 = 0.3809IL_4Y4O_206:IL_4WF9_101 = 0.3643IL_4Y4O_206:IL_4MGN_001 = 0.3692IL_4Y4O_206:IL_1KOG_007 = 0.2885IL_4Y4O_206:IL_1KOG_009 = 0.2885IL_4Y4O_206:IL_4V88_443 = 0.2612IL_4Y4O_206:IL_4WF9_033 = 0.142IL_4Y4O_206:IL_4IOA_028 = 0.1003IL_4Y4O_206:IL_4Y4O_206 = 0IL_4V9F_093IL_4Y4O_279IL_5B2P_003IL_4IOA_097IL_5J7L_347IL_4JRC_003IL_4WF9_101IL_4MGN_001IL_1KOG_007IL_1KOG_009IL_4V88_443IL_4WF9_033IL_4IOA_028IL_4Y4O_206Discrepancy0.000.100.200.300.40
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