Motif IL_76308.4 Version IL_76308.4 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6ZDP_002 | 6ZDP | 0.5865 | 1 | Tandem non-canonical cWW pairs with near WC pairs | B | Chains: B | G | 1313 | U | 1314 | U | 1315 | G | 1317 | U | 1318 | C | 1321 | * | G | 1297 | A | 1298 | C | 1299 | U | 1300 | U | 1301 | C | 1302 | cWW | ncwW | ncWW | cWW | |||
| 2 | IL_1L9A_008 | 1L9A | 0.0000 | 0 | tSH-tHW-tHS-cWW | B | signal recognition particle RNA S domain | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | * | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | cWW | ncWW | tHW | cBW | cWW | cWW | |
| 3 | IL_6DVK_004 | 6DVK | 0.3220 | 0 | tSH-tHW-tHS-cWW | H | RNA (95-MER) | C | 52 | U | 53 | A | 54 | C | 55 | C | 56 | C | 57 | * | G | 38 | A | 39 | A | 40 | C | 41 | A | 42 | G | 43 | cWW | tSH | tHW | ncBW | cWW | ||
| 4 | IL_1MFQ_007 | 1MFQ | 0.4215 | 0 | tSH-tHW-tHS-cWW | A | SRP RNA | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | * | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | cWW | tWH | ntSH | tHW | tHS | cWW | cWW |
| 5 | IL_1LNT_002 | 1LNT | 0.4873 | 0 | tSH-tHW-tHS-cWW | A+B | RNA (12-mer) | U | 4 | C | 5 | A | 6 | G | 7 | G | 8 | U | 9 | * | A | 16 | A | 17 | G | 18 | C | 19 | A | 20 | G | 21 | cWW | tSH | tHW | tHS | cWW | cWW | |
| 6 | IL_3LQX_002 | 3LQX | 0.5096 | 0 | tSH-tHW-tHS-cWW | B | SRP RNA | U | 146 | C | 147 | A | 148 | G | 149 | G | 150 | U | 151 | * | A | 160 | A | 161 | G | 162 | C | 163 | A | 164 | G | 165 | cWW | tSH | tHW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAGGU*GAGCAG | 2 |
| UCAGGU*AAGCAG | 2 |
| GUUUGUC*GACUUC | 1 |
| CUACCC*GAACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGG*AGCA | 4 |
| UUUGU*ACUU | 1 |
| UACC*AACA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW-tHS-cWW (5)
- Tandem non-canonical cWW pairs with near WC pairs (1)
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.34 | Max 0.71
Coloring options: