Motif IL_78374.1 Version IL_78374.1 of this group appears in releases 0.5 to 0.5

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_3PYO_067	3PYO	0.4261	0		A	C	1882	G	1883	A	1884	A	1885	C	1886	*	G	1856	G	1857	G	1858	A	1859	G	1860	cWW	tSH	tHS	ntHS	cWW
2	IL_2QBG_024	2QBG	0.3924	0		B	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH	tHS	tHS	cWW
3	IL_3PYO_020	3PYO	0.3705	0		A	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	ntSH	ntHS	tHS	cWW
4	IL_2XZM_092	2XZM	0.3695	0		A	G	1672	A	1673	A	1674	A	1675	A	1676	*	U	1649	G	1650	G	1651	A	1652	C	1653	cWW	tSH	ntHS	tHS	cWW
5	IL_3O58_085	3O58	0.3283	0		1	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW	tSH	tHS		cWW
6	IL_2A64_005	2A64	0.0000	0	Triple sheared	A	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	tSH	ntHS	tHS	cWW
7	IL_3G78_002	3G78	0.2253	0		A	C	70	U	71	A	72	A	73	C	74	*	G	113	G	114	A	115	C	116	G	117	cWW	ntSH	ntHS	tHS	cWW
8	IL_3IWN_002	3IWN	0.2275	0	Triple sheared	A	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35	cWW	ntSH		tHS	cWW
9	IL_2A64_006	2A64	0.2679	0	Triple sheared	A	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351	cWW		tHS	tHS	cWW
10	IL_2QBG_068	2QBG	0.3490	0		B	U	1720	G	1721	A	1722	G	1723	G	1724	*	U	1736	G	1737	G	1738	A	1739	G	1740	cWW	tSH	tHS	ntHS	cWW
11	IL_1S72_028	1S72	0.3789	0		0	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819	cWW	tSH	tHS	tHS	cWW
12	IL_3O58_044	3O58	0.3966	0		1	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW			tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAG*UGGAG	3
CGAAG*CGGAG	2
CGAAC*GGGAG	1
GAAAA*UGGAC	1
UGAAU*AGGAA	1
CUAAC*GGACG	1
CAAAC*GGACG	1
UGAGG*UGGAG	1
UGAAG*UGGAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	8
AAA*GGA	1
UAA*GAC	1
AAA*GAC	1
GAG*GGA	1

Release history

Release	0.5
Date	2011-12-08
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_78374.1	Only in the parent motif
IL_72638.1 Compare	IL_1S72_028	IL_2QBG_068, IL_2QBG_024, IL_3PYO_067, IL_3O58_044, IL_2XZM_092, IL_3G78_002, IL_3O58_085, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_3PYO_020	IL_3F1H_026, IL_3MUR_002, IL_3F1H_020, IL_3F1H_072
IL_47124.1 Compare	IL_3G78_002	IL_2QBG_068, IL_2QBG_024, IL_3PYO_067, IL_1S72_028, IL_3O58_044, IL_2XZM_092, IL_3O58_085, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_3PYO_020	IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_2ZJR_012, IL_1FJG_033, IL_1S72_021, IL_1FJG_023, IL_1S72_023, IL_2QWY_007, IL_3F1H_051, IL_2ZJR_071, IL_2ZJR_088, IL_3F1H_015, IL_2QWY_001

Children motifs

Child motif	Common motif instances	Only in IL_78374.1	Only in the child motif
IL_87904.1 Compare	IL_2QBG_024, IL_2QBG_068, IL_1S72_028, IL_2XZM_092, IL_3G78_002, IL_3IWN_002, IL_2A64_005, IL_2A64_006	IL_3O58_085, IL_3PYO_067, IL_3O58_044, IL_3PYO_020	IL_2AW7_058, IL_2ZJR_012, IL_3UXR_021, IL_1S72_083, IL_4A1B_110, IL_3UXR_093, IL_2QWY_001, IL_1S72_021, IL_2ZJR_088, IL_1U6B_002, IL_2QBG_094, IL_3UXR_016, IL_3U5F_091, IL_2QBG_019, IL_3UXR_072, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2XZM_027, IL_2ZJR_071, IL_3DHS_004

Annotations: (9)
Triple sheared (3)
Basepair signature
Heat map statistics: Min 0.12 | Avg 0.30 | Max 0.53

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Coloring options: Nucleotide numbers

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