Motif IL_89252.2 Version IL_89252.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 4-9 | 4-10 | 5-8 | 5-9 | 6-7 | 6-8 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VW3_094 | 1VW3 | 0.9290 | 0 | A | LSU rRNA | U | 3229 | U | 3230 | A | 3231 | U | 3232 | A | 3233 | A | 3242 | * | U | 3162 | U | 3163 | A | 3164 | U | 3165 | A | 3166 | U | 3167 | A | 3168 | cWW | ncWw | ncwW | ncWW | cWW | ||||
| 2 | IL_4CUV_079 | 4CUV | 0.2386 | 0 | 1 | LSU rRNA | U | 1702 | U | 1703 | A | 1704 | U | 1705 | C | 1706 | A | 1707 | * | U | 1737 | C | 1738 | U | 1739 | U | 1740 | A | 1741 | U | 1742 | G | 1743 | cWW | cwW | tHW | ncBW | cWW | ||||
| 3 | IL_3U5H_080 | 3U5H | 0.0000 | 0 | 5 | LSU rRNA | U | 1702 | U | 1703 | A | 1704 | U | 1705 | C | 1706 | A | 1707 | * | U | 1737 | C | 1738 | U | 1739 | U | 1740 | A | 1741 | U | 1742 | G | 1743 | cWW | cwW | tHW | ncBW | cWW | ncSH | |||
| 4 | IL_1VW3_051 | 1VW3 | 0.8547 | 1 | A | LSU rRNA | C | 1638 | A | 1639 | U | 1640 | A | 1641 | A | 1642 | G | 1643 | * | C | 1649 | A | 1650 | A | 1651 | A | 1653 | A | 1654 | A | 1655 | G | 1656 | cWW | tHW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAUCA*UCUUAUG | 2 |
| UUAUAA*UUAUAUA | 1 |
| CAUAAG*CAAUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUC*CUUAU | 2 |
| UAUA*UAUAU | 1 |
| AUAA*AAUAAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_89252.2 | Only in the parent motif |
|---|---|---|---|
| IL_89252.1 Compare | IL_1VW3_094, IL_1VW3_051, IL_3U5H_080 | IL_4CUV_079 |
Children motifs
| Child motif | Common motif instances | Only in IL_89252.2 | Only in the child motif |
|---|---|---|---|
| IL_69668.1 Compare | IL_4CUV_079, IL_3U5H_080 | IL_1VW3_094, IL_1VW3_051 | |
| IL_01551.1 Compare | IL_1VW3_094, IL_1VW3_051 | IL_4CUV_079, IL_3U5H_080 | IL_1VX6_131, IL_1VWW_027, IL_1VX2_074, IL_1VWW_040 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-L-R-R-tHW-bif-cWW
- Heat map statistics
- Min 0.24 | Avg 0.60 | Max 0.96
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