Motif IL_90238.1 Version IL_90238.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1LNG_003 | 1LNG | 0.0000 | 0 | B | SRP S RNA | G | 200 | C | 201 | C | 202 | A | 203 | G | 204 | G | 205 | C | 206 | * | G | 215 | A | 216 | G | 217 | C | 218 | A | 219 | A | 220 | C | 221 | cWW | tSH | tHW | tHS | cWW | cWW | ||
| 2 | IL_2OIU_002 | 2OIU | 0.8068 | 0 | P | L1 Ribozyme RNA Ligase | C | 21 | G | 22 | A | 23 | C | 24 | C | 25 | A | 26 | G | 27 | * | C | 34 | U | 35 | C | 36 | U | 37 | U | 38 | A | 39 | G | 40 | cWW | tSH | ncwW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCAGGC*GAGCAAC | 1 |
| CGACCAG*CUCUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCAGG*AGCAA | 1 |
| GACCA*UCUUA | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_90238.1 | Only in the parent motif |
|---|---|---|---|
| IL_65768.1 Compare | IL_1LNG_003 | IL_2OIU_002 | IL_1FJG_031 |
| IL_11167.1 Compare | IL_2OIU_002 | IL_1LNG_003 | IL_2NZ4_006, IL_2NZ4_013, IL_2NZ4_003, IL_2QBZ_005, IL_2NZ4_009, IL_1S72_069 |
Children motifs
| Child motif | Common motif instances | Only in IL_90238.1 | Only in the child motif |
|---|---|---|---|
| IL_97833.1 Compare | IL_1LNG_003 | IL_2OIU_002 | IL_3KTW_004 |
| IL_20328.1 Compare | IL_2OIU_002 | IL_1LNG_003 | IL_1S72_069, IL_3O58_106, IL_3O58_052 |
Coloring options: