RNA 3D Hub //

Motif IL_90459.2 Version IL_90459.2 of this group appears in releases 0.7 to 1.0

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_2QBG_0402QBG0.60121B23S rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
2 IL_3V2F_0413V2F0.59031A23S Ribosomal RNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
3 IL_4A1C_0014A1C0.6196125.8S RRNAU94C95G97*C67A68A69cWWncSWcWW
4 IL_1S72_0851S720.49242Isolated non-canonical cWW pair (H)0 LSU rRNAG2609U2610G2613*U2545U2546C2547cWWcwWcWW
5 IL_4A1B_1294A1B0.13003126S RRNAU3329U3330C3334*G3286U3287A3288cWWcwWcWW
6 IL_3U5H_1383U5H0.00003525S rRNAU3373U3374C3378*G3328U3329A3330cWWcwWcWW
7 IL_2Y9B_0012Y9B0.45800VHOMO SAPIENS U4A SNRNAC802C803G804*U825U826G827cWWcWWcWW
8 IL_3U5F_0743U5F0.81742618S rRNAU1369U1372C1373*G1352U1353G1354cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUG*CGC2
UCAG*CAA1
GUGAG*UUC1
UUCAGC*GUA1
UUAAGC*GUA1
CCG*UUG1
UUAUC*GUG1
Non-Watson-Crick part of the motif
SequenceCounts
AU*G2
CA*A1
UGA*U1
UCAG*U1
UAAG*U1
C*U1
UAU*U1

Release history

Release0.70.80.90.100.110.121.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_90459.2Only in the child motif
IL_90459.3
Compare		IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_1S72_085, IL_2Y9B_001, IL_4A1B_129, IL_3V2F_041, IL_3U5H_138IL_4IOA_037
Annotations
  • (7)
  • Isolated non-canonical cWW pair (H) (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.56 | Max 1.05
    Help

    Coloring options:

    IL_2QBG_040:IL_2QBG_040 = 0IL_2QBG_040:IL_3V2F_041 = 0.0611IL_2QBG_040:IL_4A1C_001 = 0.4945IL_2QBG_040:IL_1S72_085 = 0.8505IL_2QBG_040:IL_4A1B_129 = 0.6578IL_2QBG_040:IL_3U5H_138 = 0.6012IL_2QBG_040:IL_2Y9B_001 = 0.7095IL_2QBG_040:IL_3U5F_074 = 0.8081IL_3V2F_041:IL_2QBG_040 = 0.0611IL_3V2F_041:IL_3V2F_041 = 0IL_3V2F_041:IL_4A1C_001 = 0.4891IL_3V2F_041:IL_1S72_085 = 0.8416IL_3V2F_041:IL_4A1B_129 = 0.6487IL_3V2F_041:IL_3U5H_138 = 0.5903IL_3V2F_041:IL_2Y9B_001 = 0.6976IL_3V2F_041:IL_3U5F_074 = 0.8269IL_4A1C_001:IL_2QBG_040 = 0.4945IL_4A1C_001:IL_3V2F_041 = 0.4891IL_4A1C_001:IL_4A1C_001 = 0IL_4A1C_001:IL_1S72_085 = 0.6988IL_4A1C_001:IL_4A1B_129 = 0.6901IL_4A1C_001:IL_3U5H_138 = 0.6196IL_4A1C_001:IL_2Y9B_001 = 0.7753IL_4A1C_001:IL_3U5F_074 = 1.0454IL_1S72_085:IL_2QBG_040 = 0.8505IL_1S72_085:IL_3V2F_041 = 0.8416IL_1S72_085:IL_4A1C_001 = 0.6988IL_1S72_085:IL_1S72_085 = 0IL_1S72_085:IL_4A1B_129 = 0.4819IL_1S72_085:IL_3U5H_138 = 0.4924IL_1S72_085:IL_2Y9B_001 = 0.6052IL_1S72_085:IL_3U5F_074 = 0.9542IL_4A1B_129:IL_2QBG_040 = 0.6578IL_4A1B_129:IL_3V2F_041 = 0.6487IL_4A1B_129:IL_4A1C_001 = 0.6901IL_4A1B_129:IL_1S72_085 = 0.4819IL_4A1B_129:IL_4A1B_129 = 0IL_4A1B_129:IL_3U5H_138 = 0.13IL_4A1B_129:IL_2Y9B_001 = 0.4699IL_4A1B_129:IL_3U5F_074 = 0.8006IL_3U5H_138:IL_2QBG_040 = 0.6012IL_3U5H_138:IL_3V2F_041 = 0.5903IL_3U5H_138:IL_4A1C_001 = 0.6196IL_3U5H_138:IL_1S72_085 = 0.4924IL_3U5H_138:IL_4A1B_129 = 0.13IL_3U5H_138:IL_3U5H_138 = 0IL_3U5H_138:IL_2Y9B_001 = 0.458IL_3U5H_138:IL_3U5F_074 = 0.8174IL_2Y9B_001:IL_2QBG_040 = 0.7095IL_2Y9B_001:IL_3V2F_041 = 0.6976IL_2Y9B_001:IL_4A1C_001 = 0.7753IL_2Y9B_001:IL_1S72_085 = 0.6052IL_2Y9B_001:IL_4A1B_129 = 0.4699IL_2Y9B_001:IL_3U5H_138 = 0.458IL_2Y9B_001:IL_2Y9B_001 = 0IL_2Y9B_001:IL_3U5F_074 = 0.7447IL_3U5F_074:IL_2QBG_040 = 0.8081IL_3U5F_074:IL_3V2F_041 = 0.8269IL_3U5F_074:IL_4A1C_001 = 1.0454IL_3U5F_074:IL_1S72_085 = 0.9542IL_3U5F_074:IL_4A1B_129 = 0.8006IL_3U5F_074:IL_3U5H_138 = 0.8174IL_3U5F_074:IL_2Y9B_001 = 0.7447IL_3U5F_074:IL_3U5F_074 = 0IL_2QBG_040IL_3V2F_041IL_4A1C_001IL_1S72_085IL_4A1B_129IL_3U5H_138IL_2Y9B_001IL_3U5F_074Discrepancy0.000.200.400.600.801.00
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