Motif IL_90459.2 Version IL_90459.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_040 | 2QBG | 0.6012 | 1 | B | 23S rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW | |
| 2 | IL_3V2F_041 | 3V2F | 0.5903 | 1 | A | 23S Ribosomal RNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW | |
| 3 | IL_4A1C_001 | 4A1C | 0.6196 | 1 | 2 | 5.8S RRNA | U | 94 | C | 95 | G | 97 | * | C | 67 | A | 68 | A | 69 | cWW | ncSW | cWW | |
| 4 | IL_1S72_085 | 1S72 | 0.4924 | 2 | Isolated non-canonical cWW pair (H) | 0 | LSU rRNA | G | 2609 | U | 2610 | G | 2613 | * | U | 2545 | U | 2546 | C | 2547 | cWW | cwW | cWW |
| 5 | IL_4A1B_129 | 4A1B | 0.1300 | 3 | 1 | 26S RRNA | U | 3329 | U | 3330 | C | 3334 | * | G | 3286 | U | 3287 | A | 3288 | cWW | cwW | cWW | |
| 6 | IL_3U5H_138 | 3U5H | 0.0000 | 3 | 5 | 25S rRNA | U | 3373 | U | 3374 | C | 3378 | * | G | 3328 | U | 3329 | A | 3330 | cWW | cwW | cWW | |
| 7 | IL_2Y9B_001 | 2Y9B | 0.4580 | 0 | V | HOMO SAPIENS U4A SNRNA | C | 802 | C | 803 | G | 804 | * | U | 825 | U | 826 | G | 827 | cWW | cWW | cWW | |
| 8 | IL_3U5F_074 | 3U5F | 0.8174 | 2 | 6 | 18S rRNA | U | 1369 | U | 1372 | C | 1373 | * | G | 1352 | U | 1353 | G | 1354 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUG*CGC | 2 |
| UCAG*CAA | 1 |
| GUGAG*UUC | 1 |
| UUCAGC*GUA | 1 |
| UUAAGC*GUA | 1 |
| CCG*UUG | 1 |
| UUAUC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 2 |
| CA*A | 1 |
| UGA*U | 1 |
| UCAG*U | 1 |
| UAAG*U | 1 |
| C*U | 1 |
| UAU*U | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_90459.2 | Only in the parent motif |
|---|---|---|---|
| IL_90459.1 Compare | IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_2Y9B_001, IL_4A1B_129, IL_3U5H_138 | IL_3V2F_041, IL_1S72_085 | IL_3UXR_041, IL_2ZI0_001 |
| IL_13740.1 Compare | IL_1S72_085 | IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_2Y9B_001, IL_4A1B_129, IL_3V2F_041, IL_3U5H_138 | IL_3U5F_006, IL_2XZM_006 |
Children motifs
| Child motif | Common motif instances | Only in IL_90459.2 | Only in the child motif |
|---|---|---|---|
| IL_90459.3 Compare | IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_1S72_085, IL_2Y9B_001, IL_4A1B_129, IL_3V2F_041, IL_3U5H_138 | IL_4IOA_037 |
- Annotations
-
- (7)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.56 | Max 1.05
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