#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-32-53-4
1 IL_3U5F_0063U5F0.673736 SSU rRNAU58C59G63*C87U88G89cWWncWHcWW
2 IL_2XZM_0062XZM0.00003A SSU rRNAU57G58G62*C83U84G85ncWWncWWcWW
3 IL_1S72_0851S720.25012Isolated non-canonical cWW with bulges (H)0 LSU rRNAG2609U2610G2613*U2545U2546C2547cWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCUAAG*CUG1
UGCCAG*CUG1
GUGAG*UUC1
Non-Watson-Crick part of the motif
SequenceCounts
CUAA*U1
GCCA*U1
UGA*U1

Release history

Release0.6
Date2012-04-02
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_13740.1Only in the parent motif
IL_24421.1
Compare
IL_2XZM_006, IL_1S72_085IL_3U5F_006IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_3O58_063, IL_2XZM_075, IL_3O58_061, IL_3O30_062, IL_1O9M_004, IL_3O58_145, IL_1S72_047, IL_2QBG_020, IL_2XZM_036, IL_2XZM_037, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_3O58_097, IL_2FQN_001, IL_2FQN_004, IL_2QBG_096, IL_2O3Y_004, IL_2O3Y_001, IL_2QBG_018, IL_1FJG_058, IL_3GLP_003, IL_2O3X_004, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3O58_148, IL_2XZM_001, IL_3BNL_004, IL_3BNL_001, IL_2ZJR_090, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2XZM_082, IL_3O58_048, IL_2QBG_083, IL_3O58_040, IL_2ZJR_036, IL_3O30_003, IL_2ZJR_030, IL_3O58_163, IL_3O58_022, IL_2QEK_001, IL_1FJG_044, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_3O30_084, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_1U6B_001, IL_3O30_089, IL_2O3V_001, IL_2XZM_090, IL_3PYO_039, IL_3NJ7_003, IL_3PYO_033, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3O30_015, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_2AW7_009, IL_3PYO_075, IL_2XZM_034, IL_1MFQ_003, IL_1MFQ_002, IL_3O30_091, IL_3A3A_001, IL_1KFO_003, IL_1KFO_002, IL_5MSF_001, IL_5MSF_002, IL_3O30_020, IL_2XZM_072, IL_1FJG_062, IL_1T0D_004, IL_3BNQ_012, IL_3BNQ_001, IL_3G78_008, IL_3BNQ_006, IL_3BNQ_007, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3PYO_016, IL_3PYO_014, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_3PYO_085, IL_3O58_132, IL_1MZP_001, IL_3O58_136, IL_2XZM_043, IL_2XZM_020, IL_2AW7_062, IL_1FJG_010, IL_3O58_032, IL_3DIR_006, IL_2ZKO_001, IL_1FJG_006, IL_2ZJR_100, IL_3IVK_002, IL_3O58_086, IL_3O58_126, IL_3O30_041, IL_3O58_009, IL_3O58_008, IL_2OE5_001, IL_2XZM_058, IL_3O30_033, IL_2QBG_040, IL_2Q1R_002, IL_2Q1R_001, IL_1S72_024, IL_1T0D_002, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1U6B_005, IL_1ZX7_008, IL_3O30_086, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3O58_134, IL_3O30_052, IL_3O58_151, IL_1UN6_005, IL_2QBG_034, IL_2QBG_030, IL_2ZJR_079, IL_2AW7_064

Children motifs

Child motifCommon motif instancesOnly in IL_13740.1Only in the child motif
IL_21304.1
Compare
IL_3U5F_006, IL_2XZM_006IL_1S72_085IL_2QBG_082, IL_3V2F_079, IL_2ZJR_078, IL_3U5H_085, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_1S72_062, IL_4A1B_081
IL_90459.2
Compare
IL_1S72_085IL_3U5F_006, IL_2XZM_006IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_2Y9B_001, IL_4A1B_129, IL_3V2F_041, IL_3U5H_138
Annotations
  • (2)
  • Isolated non-canonical cWW with bulges (H) (1)
  • Basepair signature
    06_cWW-cWW-cWW
    Heat map statistics
    Min 0.25 | Avg 0.38 | Max 0.79
    Help

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