Motif IL_90538.3 Version IL_90538.3 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 1-5 | 1-13 | 2-12 | 4-12 | 5-11 | 5-13 | 8-9 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7RQB_042 | 7RQB | 0.3607 | 1 | Kink-turn | 1A | LSU rRNA | C | 1043 | G | 1044 | A | 1045 | G | 1047 | A | 1048 | C | 1049 | A | 1050 | G | 1051 | * | U | 1108 | C | 1109 | G | 1110 | A | 1111 | G | 1112 | ncsS | cWW | ntsS | tSH | tSs | cWW | |
| 2 | IL_5TBW_054 | 5TBW | 0.3257 | 1 | Kink-turn | 1 | LSU rRNA | U | 1218 | C | 1219 | U | 1220 | G | 1222 | A | 1223 | C | 1224 | A | 1225 | G | 1226 | * | C | 1283 | C | 1284 | G | 1285 | A | 1286 | A | 1287 | ncsS | cWW | ntsS | tSH | cWW | ||
| 3 | IL_5J7L_284 | 5J7L | 0.2887 | 1 | Kink-turn | DA | LSU rRNA | C | 1043 | C | 1044 | C | 1045 | G | 1047 | A | 1048 | C | 1049 | A | 1050 | G | 1051 | * | U | 1108 | C | 1109 | G | 1110 | A | 1111 | G | 1112 | ncsS | cWW | tsS | tSH | cWW | ||
| 4 | IL_4V9F_042 | 4V9F | 0.2917 | 1 | Kink-turn | 0 | LSU rRNA | C | 1147 | C | 1148 | U | 1149 | G | 1151 | A | 1152 | C | 1153 | A | 1154 | G | 1155 | * | C | 1212 | C | 1213 | G | 1214 | A | 1215 | G | 1216 | csS | cWW | ntsS | tSH | tSs | cWW | |
| 5 | IL_5D8H_001 | 5D8H | 0.0000 | 1 | Kink-turn | A | LSU rRNA | C | 1153 | U | 1154 | A | 1155 | G | 1157 | A | 1158 | C | 1159 | A | 1160 | G | 1161 | * | U | 1218 | C | 1219 | G | 1220 | A | 1221 | G | 1222 | cWW | ntsS | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGACAG*UCGAG | 1 |
| UCUAGACAG*CCGAA | 1 |
| CCCAGACAG*UCGAG | 1 |
| CCUAGACAG*CCGAG | 1 |
| CUAAGACAG*UCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAGACA*CGA | 2 |
| GAAGACA*CGA | 1 |
| CCAGACA*CGA | 1 |
| UAAGACA*CGA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (5)
- Basepair signature
- cWW-cSS-tSS-L-tSH-tSS-tHS-L-bif-cWW
- Heat map statistics
- Min 0.12 | Avg 0.18 | Max 0.36
Coloring options: