Motif IL_92459.1 Version IL_92459.1 of this group appears in releases 0.6 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_017 | 2ZJR | 0.0000 | 0 | X | LSU rRNA | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | * | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | cWW | ntSH | ntHS | tHS | ncWW | cWW |
| 2 | IL_3U5F_038 | 3U5F | 0.9267 | 0 | 6 | 18S rRNA | G | 703 | C | 704 | U | 705 | A | 706 | A | 707 | C | 708 | * | G | 730 | C | 731 | G | 732 | A | 733 | A | 734 | C | 735 | cWW | ncWW | ntHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAC*GCGGAG | 1 |
| GCUAAC*GCGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA*CGGA | 1 |
| CUAA*CGAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_92459.1 | Only in the parent motif |
|---|---|---|---|
| IL_77549.1 Compare | IL_2ZJR_017 | IL_3U5F_038 |
Children motifs
| Child motif | Common motif instances | Only in IL_92459.1 | Only in the child motif |
|---|---|---|---|
| IL_93568.1 Compare | IL_2ZJR_017 | IL_3U5F_038 | IL_1FJG_026, IL_4A1B_033, IL_4GMA_004 |
| IL_83856.1 Compare | IL_3U5F_038 | IL_2ZJR_017 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-L-tHS-L-R-cWW
- Heat map statistics
- Min 0.93 | Avg 0.46 | Max 0.93
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