RNA 3D Hub //

Motif IL_92788.3 Version IL_92788.3 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-32-52-63-63-74-5
1 IL_4V88_4514V880.89153Minor groove platform with extra cWWA6 SSU rRNAU1430C1431U1434A1436*U1276G1277G1278cWWncWWacWW
2 IL_5UNE_0025UNE0.52652Isolated basepair with bulged basesB+ARNA (47-MER)C33G34A37A38*U10G11G12cWWntSHcWW
3 IL_6CZR_1726CZR0.45142Isolated basepair with bulged bases1a SSU rRNAC1423G1424A1427G1428*C1437A1438G1439cWWtSHcWW
4 IL_4LFB_0644LFB0.45872A SSU rRNAC1440G1441A1446G1447*C1459A1460G1461cWWtSHcWW
5 IL_1XJR_0011XJR0.00001Isolated basepair with bulged basesAs2m RNAC9C10A12G13*C39A40G41cWWcWW
6 IL_4GXY_0094GXY0.55041Major groove minor groove platform with extra cWWAAdenosylcobalamin riboswitchG122G123A125G126*C105A106C107cWWntSHcWW
7 IL_4WF9_0124WF90.52811Major groove minor groove platform with extra cWWX LSU rRNAG409G410A411C413*G304A305C306cWWncWBncWSncWW
8 IL_4V9F_0844V9F0.77911Major groove minor groove platform with extra cWW0 LSU rRNAG2524G2525U2527U2528*G2494U2495C2496cWWcSHcWwcWW
9 IL_7A0S_0867A0S0.75131Major groove minor groove platform with extra cWWX LSU rRNAG2468G2469U2471U2472*A2438U2439C2440cWWcSHncWBcWwcWW
10 IL_4WF9_0924WF90.72971Major groove minor groove platform with extra cWWX LSU rRNAG2516G2517U2519U2520*A2486U2487C2488cWWcSHcWwcWW
11 IL_8VTW_0938VTW0.66491Major groove minor groove platform with extra cWW1A LSU rRNAG2489G2490U2492U2493*A2459U2460C2461cWWcSHcWwcWW
12 IL_5J7L_3375J7L0.68871Major groove minor groove platform with extra cWWDA LSU rRNAU2489G2490U2492U2493*A2459U2460A2461cWWcSHcWwcWW
13 IL_8C3A_1138C3A0.74861Major groove minor groove platform with extra cWW1 LSU rRNAU2830U2831U2833U2834*G2800U2801G2802cWWncWHcWwcWW
14 IL_5TBW_1055TBW0.80121Major groove minor groove platform with extra cWW1 LSU rRNAU2858U2859U2861U2862*G2828U2829G2830cWWncWHcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUUU*AUC3
CGGGAG*CAG2
UUUUU*GUG2
UCUGUGA*UGG1
CGGAAA*UGG1
CCGAG*CAG1
GGAAG*CAC1
GGAUC*GAC1
GGCUU*GUC1
UGUUU*AUA1
Non-Watson-Crick part of the motif
SequenceCounts
GUU*U4
GGGA*A2
UUU*U2
CUGUG*G1
GGAA*G1
CGA*A1
GAA*A1
GAU*A1
GCU*U1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove minor groove platform with extra cWW (9)
  • Isolated basepair with bulged bases (3)
  • (1)
  • Minor groove platform with extra cWW (1)
    • Basepair signature
    cWW-L-R-L-cWW-L
    Heat map statistics
    Min 0.09 | Avg 0.58 | Max 0.99
    Help

    Coloring options:

    IL_4V88_451:IL_4V88_451 = 0IL_4V88_451:IL_5UNE_002 = 0.7923IL_4V88_451:IL_6CZR_172 = 0.7998IL_4V88_451:IL_4LFB_064 = 0.8371IL_4V88_451:IL_1XJR_001 = 0.8915IL_4V88_451:IL_4GXY_009 = 0.7974IL_4V88_451:IL_4WF9_012 = 0.7781IL_4V88_451:IL_4V9F_084 = 0.8874IL_4V88_451:IL_7A0S_086 = 0.9159IL_4V88_451:IL_4WF9_092 = 0.9116IL_4V88_451:IL_8VTW_093 = 0.8829IL_4V88_451:IL_5J7L_337 = 0.9552IL_4V88_451:IL_8C3A_113 = 0.8593IL_4V88_451:IL_5TBW_105 = 0.8873IL_5UNE_002:IL_4V88_451 = 0.7923IL_5UNE_002:IL_5UNE_002 = 0IL_5UNE_002:IL_6CZR_172 = 0.3601IL_5UNE_002:IL_4LFB_064 = 0.3772IL_5UNE_002:IL_1XJR_001 = 0.5265IL_5UNE_002:IL_4GXY_009 = 0.5443IL_5UNE_002:IL_4WF9_012 = 0.6094IL_5UNE_002:IL_4V9F_084 = 0.8468IL_5UNE_002:IL_7A0S_086 = 0.879IL_5UNE_002:IL_4WF9_092 = 0.8676IL_5UNE_002:IL_8VTW_093 = 0.8237IL_5UNE_002:IL_5J7L_337 = 0.8639IL_5UNE_002:IL_8C3A_113 = 0.8683IL_5UNE_002:IL_5TBW_105 = 0.9149IL_6CZR_172:IL_4V88_451 = 0.7998IL_6CZR_172:IL_5UNE_002 = 0.3601IL_6CZR_172:IL_6CZR_172 = 0IL_6CZR_172:IL_4LFB_064 = 0.3743IL_6CZR_172:IL_1XJR_001 = 0.4514IL_6CZR_172:IL_4GXY_009 = 0.5912IL_6CZR_172:IL_4WF9_012 = 0.61IL_6CZR_172:IL_4V9F_084 = 0.7684IL_6CZR_172:IL_7A0S_086 = 0.7384IL_6CZR_172:IL_4WF9_092 = 0.7412IL_6CZR_172:IL_8VTW_093 = 0.7265IL_6CZR_172:IL_5J7L_337 = 0.7668IL_6CZR_172:IL_8C3A_113 = 0.8002IL_6CZR_172:IL_5TBW_105 = 0.8486IL_4LFB_064:IL_4V88_451 = 0.8371IL_4LFB_064:IL_5UNE_002 = 0.3772IL_4LFB_064:IL_6CZR_172 = 0.3743IL_4LFB_064:IL_4LFB_064 = 0IL_4LFB_064:IL_1XJR_001 = 0.4587IL_4LFB_064:IL_4GXY_009 = 0.4831IL_4LFB_064:IL_4WF9_012 = 0.6452IL_4LFB_064:IL_4V9F_084 = 0.8523IL_4LFB_064:IL_7A0S_086 = 0.8454IL_4LFB_064:IL_4WF9_092 = 0.8418IL_4LFB_064:IL_8VTW_093 = 0.8159IL_4LFB_064:IL_5J7L_337 = 0.8376IL_4LFB_064:IL_8C3A_113 = 0.9219IL_4LFB_064:IL_5TBW_105 = 0.9675IL_1XJR_001:IL_4V88_451 = 0.8915IL_1XJR_001:IL_5UNE_002 = 0.5265IL_1XJR_001:IL_6CZR_172 = 0.4514IL_1XJR_001:IL_4LFB_064 = 0.4587IL_1XJR_001:IL_1XJR_001 = 0IL_1XJR_001:IL_4GXY_009 = 0.5504IL_1XJR_001:IL_4WF9_012 = 0.5281IL_1XJR_001:IL_4V9F_084 = 0.7791IL_1XJR_001:IL_7A0S_086 = 0.7513IL_1XJR_001:IL_4WF9_092 = 0.7297IL_1XJR_001:IL_8VTW_093 = 0.6649IL_1XJR_001:IL_5J7L_337 = 0.6887IL_1XJR_001:IL_8C3A_113 = 0.7486IL_1XJR_001:IL_5TBW_105 = 0.8012IL_4GXY_009:IL_4V88_451 = 0.7974IL_4GXY_009:IL_5UNE_002 = 0.5443IL_4GXY_009:IL_6CZR_172 = 0.5912IL_4GXY_009:IL_4LFB_064 = 0.4831IL_4GXY_009:IL_1XJR_001 = 0.5504IL_4GXY_009:IL_4GXY_009 = 0IL_4GXY_009:IL_4WF9_012 = 0.4399IL_4GXY_009:IL_4V9F_084 = 0.7685IL_4GXY_009:IL_7A0S_086 = 0.7562IL_4GXY_009:IL_4WF9_092 = 0.7555IL_4GXY_009:IL_8VTW_093 = 0.7078IL_4GXY_009:IL_5J7L_337 = 0.7456IL_4GXY_009:IL_8C3A_113 = 0.8862IL_4GXY_009:IL_5TBW_105 = 0.9872IL_4WF9_012:IL_4V88_451 = 0.7781IL_4WF9_012:IL_5UNE_002 = 0.6094IL_4WF9_012:IL_6CZR_172 = 0.61IL_4WF9_012:IL_4LFB_064 = 0.6452IL_4WF9_012:IL_1XJR_001 = 0.5281IL_4WF9_012:IL_4GXY_009 = 0.4399IL_4WF9_012:IL_4WF9_012 = 0IL_4WF9_012:IL_4V9F_084 = 0.6031IL_4WF9_012:IL_7A0S_086 = 0.5795IL_4WF9_012:IL_4WF9_092 = 0.5768IL_4WF9_012:IL_8VTW_093 = 0.5309IL_4WF9_012:IL_5J7L_337 = 0.6156IL_4WF9_012:IL_8C3A_113 = 0.731IL_4WF9_012:IL_5TBW_105 = 0.7779IL_4V9F_084:IL_4V88_451 = 0.8874IL_4V9F_084:IL_5UNE_002 = 0.8468IL_4V9F_084:IL_6CZR_172 = 0.7684IL_4V9F_084:IL_4LFB_064 = 0.8523IL_4V9F_084:IL_1XJR_001 = 0.7791IL_4V9F_084:IL_4GXY_009 = 0.7685IL_4V9F_084:IL_4WF9_012 = 0.6031IL_4V9F_084:IL_4V9F_084 = 0IL_4V9F_084:IL_7A0S_086 = 0.1978IL_4V9F_084:IL_4WF9_092 = 0.192IL_4V9F_084:IL_8VTW_093 = 0.1652IL_4V9F_084:IL_5J7L_337 = 0.309IL_4V9F_084:IL_8C3A_113 = 0.3074IL_4V9F_084:IL_5TBW_105 = 0.4427IL_7A0S_086:IL_4V88_451 = 0.9159IL_7A0S_086:IL_5UNE_002 = 0.879IL_7A0S_086:IL_6CZR_172 = 0.7384IL_7A0S_086:IL_4LFB_064 = 0.8454IL_7A0S_086:IL_1XJR_001 = 0.7513IL_7A0S_086:IL_4GXY_009 = 0.7562IL_7A0S_086:IL_4WF9_012 = 0.5795IL_7A0S_086:IL_4V9F_084 = 0.1978IL_7A0S_086:IL_7A0S_086 = 0IL_7A0S_086:IL_4WF9_092 = 0.0938IL_7A0S_086:IL_8VTW_093 = 0.1146IL_7A0S_086:IL_5J7L_337 = 0.2968IL_7A0S_086:IL_8C3A_113 = 0.3482IL_7A0S_086:IL_5TBW_105 = 0.4599IL_4WF9_092:IL_4V88_451 = 0.9116IL_4WF9_092:IL_5UNE_002 = 0.8676IL_4WF9_092:IL_6CZR_172 = 0.7412IL_4WF9_092:IL_4LFB_064 = 0.8418IL_4WF9_092:IL_1XJR_001 = 0.7297IL_4WF9_092:IL_4GXY_009 = 0.7555IL_4WF9_092:IL_4WF9_012 = 0.5768IL_4WF9_092:IL_4V9F_084 = 0.192IL_4WF9_092:IL_7A0S_086 = 0.0938IL_4WF9_092:IL_4WF9_092 = 0IL_4WF9_092:IL_8VTW_093 = 0.0952IL_4WF9_092:IL_5J7L_337 = 0.3297IL_4WF9_092:IL_8C3A_113 = 0.3314IL_4WF9_092:IL_5TBW_105 = 0.4372IL_8VTW_093:IL_4V88_451 = 0.8829IL_8VTW_093:IL_5UNE_002 = 0.8237IL_8VTW_093:IL_6CZR_172 = 0.7265IL_8VTW_093:IL_4LFB_064 = 0.8159IL_8VTW_093:IL_1XJR_001 = 0.6649IL_8VTW_093:IL_4GXY_009 = 0.7078IL_8VTW_093:IL_4WF9_012 = 0.5309IL_8VTW_093:IL_4V9F_084 = 0.1652IL_8VTW_093:IL_7A0S_086 = 0.1146IL_8VTW_093:IL_4WF9_092 = 0.0952IL_8VTW_093:IL_8VTW_093 = 0IL_8VTW_093:IL_5J7L_337 = 0.1223IL_8VTW_093:IL_8C3A_113 = 0.2547IL_8VTW_093:IL_5TBW_105 = 0.2796IL_5J7L_337:IL_4V88_451 = 0.9552IL_5J7L_337:IL_5UNE_002 = 0.8639IL_5J7L_337:IL_6CZR_172 = 0.7668IL_5J7L_337:IL_4LFB_064 = 0.8376IL_5J7L_337:IL_1XJR_001 = 0.6887IL_5J7L_337:IL_4GXY_009 = 0.7456IL_5J7L_337:IL_4WF9_012 = 0.6156IL_5J7L_337:IL_4V9F_084 = 0.309IL_5J7L_337:IL_7A0S_086 = 0.2968IL_5J7L_337:IL_4WF9_092 = 0.3297IL_5J7L_337:IL_8VTW_093 = 0.1223IL_5J7L_337:IL_5J7L_337 = 0IL_5J7L_337:IL_8C3A_113 = 0.2763IL_5J7L_337:IL_5TBW_105 = 0.2939IL_8C3A_113:IL_4V88_451 = 0.8593IL_8C3A_113:IL_5UNE_002 = 0.8683IL_8C3A_113:IL_6CZR_172 = 0.8002IL_8C3A_113:IL_4LFB_064 = 0.9219IL_8C3A_113:IL_1XJR_001 = 0.7486IL_8C3A_113:IL_4GXY_009 = 0.8862IL_8C3A_113:IL_4WF9_012 = 0.731IL_8C3A_113:IL_4V9F_084 = 0.3074IL_8C3A_113:IL_7A0S_086 = 0.3482IL_8C3A_113:IL_4WF9_092 = 0.3314IL_8C3A_113:IL_8VTW_093 = 0.2547IL_8C3A_113:IL_5J7L_337 = 0.2763IL_8C3A_113:IL_8C3A_113 = 0IL_8C3A_113:IL_5TBW_105 = 0.1082IL_5TBW_105:IL_4V88_451 = 0.8873IL_5TBW_105:IL_5UNE_002 = 0.9149IL_5TBW_105:IL_6CZR_172 = 0.8486IL_5TBW_105:IL_4LFB_064 = 0.9675IL_5TBW_105:IL_1XJR_001 = 0.8012IL_5TBW_105:IL_4GXY_009 = 0.9872IL_5TBW_105:IL_4WF9_012 = 0.7779IL_5TBW_105:IL_4V9F_084 = 0.4427IL_5TBW_105:IL_7A0S_086 = 0.4599IL_5TBW_105:IL_4WF9_092 = 0.4372IL_5TBW_105:IL_8VTW_093 = 0.2796IL_5TBW_105:IL_5J7L_337 = 0.2939IL_5TBW_105:IL_8C3A_113 = 0.1082IL_5TBW_105:IL_5TBW_105 = 0IL_4V88_451IL_5UNE_002IL_6CZR_172IL_4LFB_064IL_1XJR_001IL_4GXY_009IL_4WF9_012IL_4V9F_084IL_7A0S_086IL_4WF9_092IL_8VTW_093IL_5J7L_337IL_8C3A_113IL_5TBW_105Discrepancy0.000.200.400.600.80
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