Motif IL_93479.1 Version IL_93479.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3CZW_002 | 3CZW | 0.2779 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 10 | G | 11 | A | 12 | * | U | 7||||2_555 | G | 8||||2_555 | A | 9||||2_555 | cWW | cWH | cWW |
| 2 | IL_1GID_006 | 1GID | 0.2768 | 5 | A | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW | |
| 3 | IL_1X8W_005 | 1X8W | 0.0000 | 5 | A | Tetrahymena ribozyme RNA | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW | |
| 4 | IL_2XXA_011 | 2XXA | 0.6055 | 1 | G | SSRP RNA | A | 19 | G | 20 | C | 21 | * | G | 78 | G | 79 | U | 81 | cWW | cWH | cWW | |
| 5 | IL_406D_002 | 406D | 0.4303 | 0 | Isolated cWH basepair | A+E | RNA (17-mer) | U | 8||A | G | 9||A | G | 10||A | * | U | 25||A | G | 26||A | G | 27||A | cWW | ncWH | cWW |
| 6 | IL_3CZW_001 | 3CZW | 0.4672 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 10||||2_555 | G | 11||||2_555 | A | 12||||2_555 | * | U | 7 | G | 8 | A | 9 | cWW | cWH | cWW |
| 7 | IL_1GID_013 | 1GID | 0.4672 | 5 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW | |
| 8 | IL_2R22_001 | 2R22 | 0.4677 | 0 | A+B | RNA (13-mer) | U | 6 | G | 7 | A | 8 | * | U | 19 | G | 20 | A | 21 | cWW | cWH | cWW | |
| 9 | IL_2XXA_004 | 2XXA | 0.4156 | 1 | F | SSRP RNA | A | 19 | G | 20 | C | 21 | * | G | 78 | G | 79 | U | 81 | cWW | ncWH | cWW | |
| 10 | IL_2AW7_011 | 2AW7 | 0.4270 | 0 | A | 16S ribosomal RNA | G | 144 | G | 145 | G | 146 | * | C | 176 | G | 177 | C | 178 | cWW | cWH | cWW | |
| 11 | IL_420D_002 | 420D | 0.5966 | 0 | A+B | RNA (16-mer) | A | 10 | A | 11 | U | 12 | * | A | 21 | G | 22 | U | 23 | cWW | cWH | cWW | |
| 12 | IL_420D_001 | 420D | 0.6567 | 0 | B+A | RNA (16-mer) | A | 26 | A | 27 | U | 28 | * | A | 5 | G | 6 | U | 7 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGA*UGA | 3 |
| GUA*UAAUAAGC | 3 |
| AGC*GGGU | 2 |
| AAU*AGU | 2 |
| UGG*UGG | 1 |
| GGG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 5 |
| U*AAUAAG | 3 |
| G*GG | 2 |
| A*G | 2 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_93479.1 | Only in the parent motif |
|---|---|---|---|
| IL_29746.3 Compare | IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002 | IL_1X8W_005, IL_2AW7_011, IL_1GID_006, IL_2XXA_011, IL_2XXA_004, IL_1GID_013 | IL_3F1H_062, IL_3LOA_003 |
| IL_62527.1 Compare | IL_1GID_006, IL_1GID_013 | IL_420D_002, IL_420D_001, IL_3CZW_002, IL_3CZW_001, IL_1X8W_005, IL_2AW7_011, IL_2R22_001, IL_2XXA_011, IL_406D_002, IL_2XXA_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_93479.1 | Only in the child motif |
|---|---|---|---|
| IL_11616.1 Compare | IL_420D_002, IL_420D_001, IL_3CZW_002, IL_3CZW_001, IL_1X8W_005, IL_2AW7_011, IL_1GID_006, IL_2R22_001, IL_2XXA_011, IL_2XXA_004, IL_406D_002, IL_1GID_013 | IL_3R1C_007, IL_3R1C_006, IL_3R1C_005, IL_3R1C_004, IL_3R1C_003, IL_3R1C_002, IL_3R1C_001, IL_3R1C_009, IL_3R1C_008, IL_2Y9B_007, IL_3R1D_005, IL_3U5F_044, IL_3R1D_002, IL_3U5F_023, IL_3U5F_022, IL_3R1C_018, IL_3R1C_014, IL_3R1C_015, IL_3R1C_016, IL_3R1C_017, IL_3R1C_010, IL_3R1C_011, IL_3R1C_012, IL_3R1C_013, IL_3NJ7_003, IL_2ZJR_029, IL_3NJ7_006, IL_3R1C_019, IL_3NJ7_004, IL_3NJ7_001, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3R1C_021, IL_3R1C_020, IL_3R1C_023, IL_3R1C_022, IL_3R1C_025, IL_3R1C_024, IL_3R1C_026 |
- Annotations
-
- (9)
- Isolated cWH basepair (3)
- Basepair signature
- Heat map statistics
- Min 0.04 | Avg 0.37 | Max 0.68
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