Motif IL_20844.1 Version IL_20844.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-8 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_094 | 2ZJR | 0.0000 | 4 | tSH-tHS-tHW (H) | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | cWW | tWH | tSH | ntHS | cWW | ||
| 2 | IL_3F1H_099 | 3F1H | 0.1702 | 4 | A | 23S RRNA | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | * | C | 2774 | A | 2775 | A | 2776 | A | 2778 | G | 2782 | cWW | tWH | tSH | tHS | cWW | |||
| 3 | IL_1S72_083 | 1S72 | 0.6887 | 0 | Triple sheared (H) | 0 | LSU rRNA | G | 2501 | C | 2502 | A | 2503 | A | 2504 | G | 2505 | * | C | 2515 | G | 2516 | A | 2517 | C | 2518 | C | 2519 | cWW | cWB | ntSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGAG*CAAGAUGAG | 2 |
| GCAAG*CGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGA*AAGAUGA | 2 |
| CAA*GAC | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_20844.1 | Only in the parent motif |
|---|---|---|---|
| IL_42271.1 Compare | IL_3F1H_099, IL_2ZJR_094 | IL_1S72_083 | IL_1S72_056, IL_1S72_089 |
| IL_79318.1 Compare | IL_1S72_083 | IL_3F1H_099, IL_2ZJR_094 | IL_1S72_028, IL_3F1H_020, IL_3F1H_072 |
Children motifs
| Child motif | Common motif instances | Only in IL_20844.1 | Only in the child motif |
|---|---|---|---|
| IL_94031.1 Compare | IL_1S72_083 | IL_3F1H_099, IL_2ZJR_094 | IL_2ZJR_088, IL_2XZM_027, IL_1U6B_002, IL_2QBG_094, IL_2AW7_058 |
| IL_94438.1 Compare | IL_2ZJR_094 | IL_1S72_083, IL_3F1H_099 | IL_3PYO_089, IL_1S72_089, IL_2QBG_100 |
- Annotations
-
- Triple sheared (H) (1)
- tSH-tHS-tHW (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.33 | Max 0.69
Coloring options: