Motif IL_95965.1 Version IL_95965.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1QA6_002 | 1QA6 | 0.5185 | 1 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | G | 137 | A | 139 | A | 140 | * | U | 151 | C | 152 | cWW | cSH | ntSH | cWW | |
| 2 | IL_1S03_004 | 1S03 | 0.4578 | 0 | Major groove platform | A | 47-MER | C | 34 | A | 35 | A | 36 | * | U | 16 | G | 17 | cWW | cSH | tSH | cWW |
| 3 | IL_2QBG_078 | 2QBG | 0.3882 | 0 | B | 23S rRNA | C | 2050 | A | 2051 | A | 2052 | * | U | 2617 | G | 2618 | cWW | cSH | tSH | cWW | |
| 4 | IL_1S03_008 | 1S03 | 0.3872 | 0 | Major groove platform | B | 47-MER | C | 34 | A | 35 | A | 36 | * | U | 16 | G | 17 | cWW | cSH | tSH | cWW |
| 5 | IL_1QA6_004 | 1QA6 | 0.0000 | 1 | D | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | G | 137 | A | 139 | A | 140 | * | U | 151 | C | 152 | cWW | cSH | ntSH | cWW | |
| 6 | IL_1G1X_001 | 1G1X | 0.0001 | 1 | Major groove platform; stack outside cWW | E+D | 16S RIBOSOMAL RNA | U | 751 | G | 752 | C | 754 | * | G | 654 | A | 655 | cWW | ncSH | tSH | cWW |
| 7 | IL_2QBG_064 | 2QBG | 0.3716 | 1 | B | 23S rRNA | G | 1666 | G | 1667 | A | 1669 | * | U | 1993 | C | 1994 | cWW | tSH | cWW | ||
| 8 | IL_1I6U_001 | 1I6U | 0.3962 | 0 | Major groove platform | C | 16S RRNA FRAGMENT | U | 9 | A | 10 | A | 11 | * | U | 28 | G | 29 | cWW | cSH | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAA*UG | 3 |
| GAAA*UC | 2 |
| UGAC*GA | 1 |
| GGAA*UC | 1 |
| UAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 4 |
| AA* | 2 |
| GA* | 2 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_95965.1 | Only in the parent motif |
|---|---|---|---|
| IL_45564.3 Compare | IL_1S03_008, IL_1I6U_001, IL_1QA6_004, IL_1QA6_002, IL_1S03_004 | IL_1G1X_001, IL_2QBG_078, IL_2QBG_064 | IL_1XJR_002, IL_2ZJR_098, IL_3F1H_008, IL_2ZJR_083, IL_1FJG_028, IL_3F1H_090, IL_1G1X_002, IL_1FJG_024, IL_3F1H_089, IL_3OWZ_007, IL_3F1H_075, IL_3OWZ_003, IL_1I6U_003, IL_1S72_080, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_074, IL_2ZJR_089, IL_3NKB_002, IL_3F1H_103, IL_3F1H_108 |
| IL_30798.2 Compare | IL_1G1X_001 | IL_1QA6_004, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_2QBG_064, IL_1I6U_001, IL_2QBG_078 | IL_2ZJR_022, IL_2ZJR_046, IL_1S72_008, IL_1S72_050, IL_3D0U_004, IL_3F1H_063, IL_2ZJR_062, IL_1F7Y_001, IL_1S72_061, IL_1FJG_027, IL_3F1H_048, IL_3DIR_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_95965.1 | Only in the child motif |
|---|---|---|---|
| IL_39199.1 Compare | IL_1QA6_004, IL_1QA6_002, IL_1S03_004, IL_1G1X_001, IL_1S03_008, IL_2QBG_064, IL_1I6U_001, IL_2QBG_078 | IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_2QBG_049, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_4A1B_111, IL_1I6U_003, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_4A1B_080, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074 |
- Annotations
-
- (4)
- Major groove platform (3)
- Major groove platform; stack outside cWW (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.31 | Max 0.56
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