#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-32-43-4
1 IL_1QA6_0021QA60.51851C58 NUCLEOTIDE RIBOSOMAL RNA DOMAING137A139A140*U151C152cWWcSHntSHcWW
2 IL_1S03_0041S030.45780Major groove platformA47-MERC34A35A36*U16G17cWWcSHtSHcWW
3 IL_2QBG_0782QBG0.38820B23S rRNAC2050A2051A2052*U2617G2618cWWcSHtSHcWW
4 IL_1S03_0081S030.38720Major groove platformB47-MERC34A35A36*U16G17cWWcSHtSHcWW
5 IL_1QA6_0041QA60.00001D58 NUCLEOTIDE RIBOSOMAL RNA DOMAING137A139A140*U151C152cWWcSHntSHcWW
6 IL_1G1X_0011G1X0.00011Major groove platform; stack outside cWWE+D16S RIBOSOMAL RNAU751G752C754*G654A655cWWncSHtSHcWW
7 IL_2QBG_0642QBG0.37161B23S rRNAG1666G1667A1669*U1993C1994cWWtSHcWW
8 IL_1I6U_0011I6U0.39620Major groove platformC16S RRNA FRAGMENTU9A10A11*U28G29cWWcSHntSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAA*UG3
GAAA*UC2
UGAC*GA1
GGAA*UC1
UAA*UG1
Non-Watson-Crick part of the motif
SequenceCounts
A*4
AA*2
GA*2

Release history

Release0.5
Date2011-12-08
StatusNew id, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_95965.1Only in the child motif
IL_39199.1
Compare
IL_1QA6_004, IL_1QA6_002, IL_1S03_004, IL_1G1X_001, IL_1S03_008, IL_2QBG_064, IL_1I6U_001, IL_2QBG_078IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_2QBG_049, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_4A1B_111, IL_1I6U_003, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_4A1B_080, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074
Annotations
  • (4)
  • Major groove platform (3)
  • Major groove platform; stack outside cWW (1)
  • Basepair signature
    Heat map statistics
    Min 0.00 | Avg 0.31 | Max 0.56
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