#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-41-52-33-54-5
1 IL_4A1B_0874A1B0.77351126S RRNAU2195G2196*U2236A2237A2239cWWcWW
2 IL_2QBG_0012QBG0.74800A5S rRNAC17G18*U65A66G67cWWcWW
3 IL_3U5H_0843U5H0.72551525S rRNAU2336C2337*G1898G1899A1901tHScWWcWW
4 IL_2QBG_0642QBG0.72201B23S rRNAU1993C1994*G1666G1667A1669tHScWWcWW
5 IL_2QBG_0492QBG0.72131B23S rRNAA1603C1604*G1310G1311U1313ntHScWWcWW
6 IL_2QBG_0912QBG0.40630B23S rRNAG2454G2455*C2496A2497C2498cWWcWWcSH
7 IL_4A1B_1064A1B0.39950126S RRNAG2811G2812*U2853C2854C2855cWWcWWncSH
8 IL_2QBG_0442QBG0.40161B23S rRNAU1101C1102*G1087A1089A1090cWWcWWncSH
9 IL_2ZJR_0832ZJR0.30810Major groove platform (H)X LSU rRNAG2393G2394*U2380A2381C2382cWWcWWncSH
10 IL_1I6U_0011I6U0.35160Major groove platformC16S RRNA FRAGMENTU28G29*U9A10A11ntHScWWcWWcSH
11 IL_3UXR_0903UXR0.36940A23S ribosomal RNAG2454G2455*C2496A2497C2498cWWcWWcSH
12 IL_1S03_0041S030.44820Major groove platformA47-MERU16G17*C34A35A36tHScWWcWWcSH
13 IL_1XJR_0021XJR0.44720Major groove platformAs2m RNAG13G14*U37A38C39cWWcWWcSH
14 IL_1S03_0081S030.44990Major groove platformB47-MERU16G17*C34A35A36tHScWWcWWcSH
15 IL_3D0U_0043D0U0.52631Major groove platform; stack outside cWWALysine Riboswitch RNAG51G52*C35A36C38cWWcWWcSH
16 IL_3Q1Q_0013Q1Q0.55550BRNase P RNAG328C329*G51U52C53cWWcWWncSH
17 IL_1G1X_0021G1X0.47860Major groove platformD+E16S RIBOSOMAL RNAG657G658*C747C748C749cWWcWWncSH
18 IL_3SUX_0023SUX0.64640Major groove platformX THF riboswitchG37A38*U47G48U49cWWncWW
19 IL_1QA6_0041QA60.47571D58 NUCLEOTIDE RIBOSOMAL RNA DOMAINU151C152*G137A139A140ntHScWWcWWcSH
20 IL_1G1X_0011G1X0.51771Major groove platform; stack outside cWWD+E16S RIBOSOMAL RNAG654A655*U751G752C754tHScWWcWWncSH
21 IL_3P49_0073P490.49790AGlycine riboswitchG38A39*U49U50C51ncWWcWWncSH
22 IL_1FJG_0241FJG0.48350Major groove platform (H)A SSU rRNAG644C645*G594G595C596ntHScWWcWWncSH
23 IL_3UXR_0883UXR0.43880A23S ribosomal RNAG2414G2415*U2401C2402C2403cWWcWWncSH
24 IL_1S72_0801S720.46180Major groove platform (H)0 LSU rRNAG2489A2490*U2531A2532C2533cWWcWWcSH
25 IL_2XZM_0792XZM0.31790A18S RRNAU1469C1470*G1479U1480A1481cWWcWWncSH
26 IL_2AW7_0312AW70.33600A16S ribosomal RNAU644G645*U594A595A596cWWcWWncSH
27 IL_4A1B_1114A1B0.26700126S RRNAC2864G2865*U2937G2938G2939cWWcWW
28 IL_3UXR_0913UXR0.26470A23S ribosomal RNAU2493G2494*U2457G2458A2459ntHScWWcWW
29 IL_2ZJR_0862ZJR0.22130X LSU rRNAU2472G2473*U2436G2437A2438tHScWWncWW
30 IL_3DIR_0043DIR0.26621ARNA (174-MER)G54G55*C38A39C41cWWcWW
31 IL_3U5H_1083U5H0.27200525S rRNAG2823G2824*U2865U2866C2867cWWcWWncSHcSH
32 IL_3UXR_0753UXR0.31020A23S ribosomal RNAC2617G2618*C2050A2051G2052cWWcWWcSH
33 IL_2QBG_0782QBG0.33090B23S rRNAU2617G2618*C2050A2051A2052tHScWWcWWcSH
34 IL_1I6U_0031I6U0.32300D16S RRNA FRAGMENTU28G29*U9A10A11ntHScWWcWWcSH
35 IL_3OWZ_0033OWZ0.35350ADomain II of glycine riboswitchG35G36*C68U69C70cWWcWWcSH
36 IL_2XZM_0552XZM0.35350A18S RRNAU1100C1101*G1091U1092A1093cWWcWWncSH
37 IL_3OWZ_0073OWZ0.36020BDomain II of glycine riboswitchG35G36*C68U69C70cWWcWWcSH
38 IL_3UXR_0943UXR0.38050A23S ribosomal RNAC2507G2508*U2580G2581G2582cWWcWWchH
39 IL_3P49_0103P490.48860AGlycine riboswitchG113G114*C140U141C142cWWcWWncSH
40 IL_1FJG_0271FJG0.50721Major groove platform; stack outside cWW (H)A SSU rRNAG654A655*U751G752C754tHScWWcWWncSH
41 IL_2ZJR_0622ZJR0.54061X LSU rRNAU1976C1977*G1683G1684A1686tHScWWcWW
42 IL_1F7Y_0011F7Y0.51171B16S RIBOSOMAL RNA FRAGMENTG18A19*U50G51C53tHScWWcWWncSH
43 IL_2QBG_0952QBG0.50410B23S rRNAC2507G2508*U2580G2581G2582cWWcWWchH
44 IL_4A1B_1084A1B0.48360126S RRNAU2850G2851*U2814U2815G2816cWWcWW
45 IL_1FJG_0281FJG0.48040Major groove platform (H)A SSU rRNAG657G658*C747C748C749cWWcWWncSH
46 IL_1QA6_0021QA60.47451C58 NUCLEOTIDE RIBOSOMAL RNA DOMAINU151C152*G137A139A140ntHScWWcWWcSH
47 IL_2ZJR_0892ZJR0.46900X LSU rRNAC2486G2487*U2559G2560G2561ncWWcWWchH
48 IL_2AW7_0342AW70.51601A16S ribosomal RNAG654A655*U751G752C754tHScWWcWW
49 IL_2QBG_0252QBG0.49450B23S rRNAG757C758*G738A739C740cWWcWWcSH
50 IL_2ZJR_0852ZJR0.27600Major groove platform (H)X LSU rRNAG2433G2434*C2475A2476C2477cWWcWWncSH
51 IL_4A1B_0214A1B0.20580126S RRNAU473G474*U503A504A505cWWncWWncSH
52 IL_3NKB_0023NKB0.00000Major groove platformBThe hepatitis delta virus ribozymeU47C48*G55U56A57cWWcWWcSH
53 IL_3UXR_0093UXR0.21800A23S ribosomal RNAG272|||DG272|||E*U363|||EA363|||FC364cWWcWW
54 IL_2ZJR_0742ZJR0.23440Major groove platform (H)X LSU rRNAC2596G2597*C2033A2034G2035cWWcWWncSH
55 IL_2QBG_0922QBG0.25650B23S rRNAU2493G2494*U2457G2458A2459cWWcWW
56 IL_4A1B_0804A1B0.55161126S RRNAU2331C2332*G1922G1923A1925tHScWWcWW
57 IL_1S72_0611S720.532610 LSU rRNAU2034C2035*G1744G1745A1747tHScWWcWW
58 IL_1ET4_0061ET40.60170CRNA APTAMER, 35-MERC418C419*G426U427G428cWWcWW
59 IL_1ET4_0101ET40.61700ERNA APTAMER, 35-MERC118C119*G126U127G128cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UC*GGAA5
UG*UAA4
GA*UGAC4
CG*UGG4
GG*CAC3
UC*GAAA3
GG*UAC3
UG*CAA3
UC*GUA3
UG*UGA3
GG*CUC3
GG*UCC2
GG*CAUC2
GG*CCC2
CG*CAG2
CC*GUG2
UG*UAAA1
CG*UAG1
AC*GGUU1
GC*GUC1
GA*UGU1
GA*UUC1
GC*GGC1
GA*UAC1
GG*UUC1
UG*UUG1
GC*GAC1
Non-Watson-Crick part of the motif
SequenceCounts
*A18
*U12
*GA9
*G9
*AA4
*C4
*AU2
*GU1

Release history

Release0.6
Date2012-04-02
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_39199.1Only in the parent motif
IL_91075.1
Compare
IL_1FJG_028, IL_1S72_080, IL_2XZM_079, IL_2AW7_031, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_3P49_010, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2QBG_091, IL_1XJR_002, IL_2ZJR_083, IL_3P49_007, IL_1I6U_003, IL_3OWZ_007, IL_2XZM_055, IL_3OWZ_003, IL_2ZJR_074IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_4A1B_111, IL_3UXR_088, IL_1S72_061, IL_1ET4_010, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_092, IL_2QBG_095, IL_4A1B_021, IL_1I6U_001, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3SUX_002IL_3PYO_070, IL_3PYO_081, IL_3O58_125, IL_3O30_045, IL_3PYO_080
IL_95965.1
Compare
IL_1QA6_004, IL_1QA6_002, IL_1S03_004, IL_1G1X_001, IL_1S03_008, IL_2QBG_064, IL_1I6U_001, IL_2QBG_078IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_2QBG_049, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_4A1B_111, IL_1I6U_003, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_4A1B_080, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074
IL_60288.1
Compare
IL_2ZJR_089, IL_2QBG_092, IL_2QBG_095IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074IL_3O58_131, IL_3O58_127, IL_3O58_150, IL_3PYO_098, IL_3O58_103
IL_01628.1
Compare
IL_1F7Y_001, IL_1FJG_027, IL_1FJG_024IL_1FJG_028, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074
IL_13468.1
Compare
IL_1S72_061, IL_2ZJR_062IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_4A1B_080, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074IL_1S72_008
IL_61133.1
Compare
IL_1ET4_006, IL_1ET4_010IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_3UXR_091, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074IL_2PN4_008, IL_1ET4_008, IL_2ZJR_011, IL_2PN4_003, IL_2ZJR_016, IL_2ZJR_015, IL_2AW7_051, IL_1XOK_001, IL_3O58_066, IL_1XOK_002, IL_1U9S_008, IL_1S72_099, IL_3O58_142, IL_2C50_002, IL_3O30_068, IL_3O58_068, IL_2XZM_030, IL_3D2V_004, IL_3D2V_001, IL_1S72_042, IL_1S72_040, IL_2QUX_001, IL_3O30_026, IL_1GID_002, IL_2ZJR_068, IL_2XXA_003, IL_2ZJR_065, IL_2XXA_005, IL_2IPY_002, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_3O30_071, IL_3O58_074, IL_3O58_076, IL_2AW7_017, IL_1GID_009, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_3O30_065, IL_3PYO_037, IL_1S72_014, IL_2XZM_009, IL_2ZJR_093, IL_3B31_001, IL_2XXA_010, IL_2XXA_012, IL_1S72_086, IL_2NOK_006, IL_387D_001, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_2ZJR_034, IL_1DUQ_006, IL_2ZJR_031, IL_2QBG_089, IL_3O58_160, IL_3IVK_003, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_1S72_064, IL_1GID_012, IL_1S72_088, IL_2PLY_002, IL_1S72_104, IL_1U9S_006, IL_6MSF_001, IL_1U9S_003, IL_1U9S_001, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_3PYO_034, IL_2C50_001, IL_3PYO_032, IL_2OIU_003, IL_2OIU_001, IL_3O58_057, IL_3PYO_095, IL_3O30_010, IL_3O58_051, IL_3O58_112, IL_2C4Z_001, IL_2XZM_068, IL_2AW7_005, IL_2PJP_001, IL_1S72_074, IL_2AW7_001, IL_2AW7_002, IL_2C4Z_002, IL_2QBG_073, IL_2QBG_023, IL_3OWZ_005, IL_2GIS_001, IL_3PYO_002, IL_3OWZ_001, IL_1S72_002, IL_3PYO_008, IL_2AW7_008, IL_2BQ5_002, IL_2ZJR_056, IL_3PYO_061, IL_2BQ5_001, IL_3O30_024, IL_3PYO_064, IL_2BU1_002, IL_2BU1_001, IL_1DUQ_002, IL_3O58_100, IL_1DUQ_004, IL_3G78_004, IL_2XZM_074, IL_1DUQ_008, IL_2AW7_019, IL_2XZM_065, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_2QBG_060, IL_3D0U_005, IL_3D0U_001, IL_2IZN_002, IL_2IZN_001, IL_3IVK_001, IL_3PYO_018, IL_2A64_002, IL_2IZM_001, IL_2IZM_002, IL_1U63_004, IL_1MFQ_005, IL_1U63_002, IL_1KXK_003, IL_1X8W_001, IL_3O58_133, IL_1FUF_002, IL_3O58_137, IL_1FJG_016, IL_1FJG_014, IL_3G78_015, IL_1S72_096, IL_3DIR_001, IL_3O58_046, IL_3DIR_005, IL_1S03_002, IL_1S03_001, IL_1S03_006, IL_1S03_005, IL_1FJG_005, IL_1S72_010, IL_3MUR_003, IL_1NBS_005, IL_1R3E_001, IL_3MUR_004, IL_1R3E_002, IL_2A64_003, IL_3PYO_019, IL_2IZ9_001, IL_2IZ9_002, IL_2ZY6_002, IL_3PYO_044, IL_3O58_087, IL_2QBG_070, IL_1ET4_004, IL_2NZ4_007, IL_3PYO_072, IL_3O58_121, IL_2XZM_056, IL_2XZM_057, IL_1FJG_007, IL_1S72_030, IL_1FJG_001, IL_1FJG_002, IL_2XZM_013, IL_1S72_077, IL_3MEI_001, IL_3PYO_088, IL_2VPL_005, IL_1S72_027, IL_1S72_026, IL_2VPL_002, IL_1S72_022, IL_3PYO_078, IL_3P49_003, IL_1S72_067, IL_2XZM_021, IL_2AW7_048, IL_1DQH_001, IL_3O30_022, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_1FJG_036, IL_2QUX_004, IL_2QUX_005, IL_2QUX_006, IL_1JZV_002, IL_1JZV_005, IL_3O58_017, IL_2QUX_002, IL_2QUX_003, IL_2IPY_005, IL_2XZM_023, IL_2QBG_035, IL_1FUF_003, IL_2PLY_001, IL_2XZM_024, IL_2XZM_029, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_3DHS_002, IL_3DHS_003, IL_2ZJR_076
IL_64973.1
Compare
IL_2QBG_049IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074
IL_48662.1
Compare
IL_3NKB_002IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074
IL_38336.1
Compare
IL_3DIR_004IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074IL_2ZJR_022, IL_2ZJR_046, IL_1S72_050, IL_1NTB_003, IL_3O30_044, IL_3O58_078, IL_3O58_094
IL_85789.1
Compare
IL_2AW7_034IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074

Children motifs

Child motifCommon motif instancesOnly in IL_39199.1Only in the child motif
IL_39199.2
Compare
IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_1S72_080, IL_2XZM_079, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3P49_007, IL_2ZJR_089, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2QBG_092, IL_2QBG_095, IL_2ZJR_083, IL_3Q1Q_001, IL_4A1B_021, IL_4A1B_111, IL_1I6U_003, IL_4A1B_108, IL_4A1B_106, IL_3DIR_004, IL_2QBG_078, IL_1QA6_002, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074IL_1QA6_004, IL_3UXR_088, IL_1S03_004, IL_3UXR_009, IL_1I6U_001, IL_1ET4_006, IL_3UXR_075, IL_3UXR_090, IL_3UXR_091, IL_1ET4_010, IL_3UXR_094IL_3V2F_090, IL_3V2F_087, IL_3V2F_097, IL_3V2F_089, IL_3V2F_075, IL_3V2F_009, IL_3V2F_063
Annotations
  • (43)
  • Major groove platform (7)
  • Major groove platform (H) (6)
  • Major groove platform; stack outside cWW (2)
  • Major groove platform; stack outside cWW (H) (1)
  • Basepair signature
    05_tHS,cWW-cWW--cSH
    Heat map statistics
    Min 0.00 | Avg 0.49 | Max 0.99
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