Motif IL_99692.1 Version IL_99692.1 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 1-5 | 1-13 | 2-12 | 4-12 | 5-11 | 5-13 | 7-10 | 8-9 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5D8H_001 | 5D8H | 0.2887 | 1 | Kink-turn | A | LSU rRNA | C | 1153 | U | 1154 | A | 1155 | G | 1157 | A | 1158 | C | 1159 | A | 1160 | G | 1161 | * | U | 1218 | C | 1219 | G | 1220 | A | 1221 | G | 1222 | cWW | ntsS | tSH | tHS | cWW | |||
| 2 | IL_5J7L_284 | 5J7L | 0.0000 | 1 | Kink-turn | DA | LSU rRNA | C | 1043 | C | 1044 | C | 1045 | G | 1047 | A | 1048 | C | 1049 | A | 1050 | G | 1051 | * | U | 1108 | C | 1109 | G | 1110 | A | 1111 | G | 1112 | ncsS | cWW | tsS | tSH | cWW | |||
| 3 | IL_4V9F_042 | 4V9F | 0.1192 | 1 | Kink-turn | 0 | LSU rRNA | C | 1147 | C | 1148 | U | 1149 | G | 1151 | A | 1152 | C | 1153 | A | 1154 | G | 1155 | * | C | 1212 | C | 1213 | G | 1214 | A | 1215 | G | 1216 | csS | cWW | ntsS | tSH | tSs | cWW | ||
| 4 | IL_8P9A_282 | 8P9A | 0.1713 | 1 | Kink-turn (H) | AR | LSU rRNA | U | 1218 | C | 1219 | U | 1220 | G | 1222 | A | 1223 | C | 1224 | A | 1225 | G | 1226 | * | C | 1283 | C | 1284 | G | 1285 | A | 1286 | A | 1287 | cWW | tsS | tSH | ncWW | cWW | |||
| 5 | IL_9DFE_041 | 9DFE | 0.1703 | 1 | Kink-turn (H) | 1A | LSU rRNA | C | 1043 | G | 1044 | A | 1045 | G | 1047 | A | 1048 | C | 1049 | A | 1050 | G | 1051 | * | U | 1108 | C | 1109 | G | 1110 | A | 1111 | G | 1112 | ncsS | cWW | ntsS | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAGACAG*UCGAG | 1 |
| CCCAGACAG*UCGAG | 1 |
| CCUAGACAG*CCGAG | 1 |
| UCUAGACAG*CCGAA | 1 |
| CGAAGACAG*UCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAGACA*CGA | 2 |
| UAAGACA*CGA | 1 |
| CCAGACA*CGA | 1 |
| GAAGACA*CGA | 1 |
- Annotations
-
- Kink-turn (3)
- Kink-turn (H) (2)
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Heat map statistics
- Min 0.12 | Avg 0.19 | Max 0.35
Coloring options: