Motif J3_31965.1 Version J3_31965.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 5-8 | 6-7 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4WF9_016 | 4WF9 | 0.1631 | 2 | X | LSU rRNA | U | 1381 | C | 1382 | G | 1383 | G | 1384 | G | 1385 | C | 1387 | * | G | 1418 | A | 1419 | U | 1420 | A | 1422 | * | U | 1439 | A | 1440 | cWW | cWW | ncWW | |
| 2 | J3_7A0S_018 | 7A0S | 0.0000 | 2 | X | LSU rRNA | U | 1357 | C | 1358 | G | 1359 | G | 1360 | G | 1361 | C | 1363 | * | G | 1394 | A | 1395 | C | 1396 | G | 1398 | * | C | 1415 | A | 1416 | cWW | cWW | cWW | |
| 3 | J3_9DFE_012 | 9DFE | 0.1891 | 2 | 1A | LSU rRNA | G | 1344 | C | 1345 | G | 1346 | G | 1347 | G | 1348 | C | 1350 | * | G | 1381 | G | 1382 | C | 1383 | G | 1385 | * | C | 1402 | C | 1403 | cWW | cWW | cWW | |
| 4 | J3_8P9A_055 | 8P9A | 0.5082 | 1 | AR | LSU rRNA | U | 1526 | C | 1527 | G | 1528 | A | 1529 | U | 1530 | C | 1531 | * | G | 1591 | G | 1592 | A | 1593 | U | 1595 | * | A | 1612 | A | 1613 | cWW | ntHS | cWW | cWW |
| 5 | J3_4V9F_016 | 4V9F | 0.5392 | 1 | 0 | LSU rRNA | C | 1450 | C | 1451 | G | 1452 | G | 1453 | U | 1454 | C | 1455 | * | G | 1490 | G | 1491 | A | 1492 | A | 1494 | * | U | 1511 | G | 1512 | cWW | ntHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCGGGUC*GAUAA*UA | 1 |
| UCGGGAC*GACAG*CA | 1 |
| GCGGGAC*GGCAG*CC | 1 |
| UCGAUC*GGAAU*AA | 1 |
| CCGGUC*GGAAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGGGU*AUA* | 1 |
| CGGGA*ACA* | 1 |
| CGGGA*GCA* | 1 |
| CGAU*GAA* | 1 |
| CGGU*GAA* | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.31 | Max 0.58
Coloring options: