1NBS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1NBS_001 | 1/A/96:107 | No text annotation | homologous HL_1NBS_004 HL_48408.1 | |
| HL_1NBS_002 | 1/A/118:125 | No text annotation | geometric HL_7RQB_022 NA | |
| HL_1NBS_004 | 1/B/96:107 | No text annotation HL_48408.1 | ||
| HL_1NBS_006 | 1/B/152:157 | UNCG HL_61337.3 | ||
| HL_1NBS_007 | 1/B/204:209 | GNRA HL_34789.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1NBS_003 | No text annotation | ||
| HL_1NBS_005 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1NBS_001 | 1/A/113:114, 1/A/129:131 | Single bulged A | homologous IL_1NBS_005 IL_14190.2 | |
| IL_1NBS_002 | 1/A/181:182, 1/A/228:231 | Major groove intercalation | homologous IL_1NBS_009 IL_71421.2 | |
| IL_1NBS_003 | 1/A/184:197, 1/A/216:226 | No text annotation | geometric IL_1NBS_010 IL_84409.1 | |
| IL_1NBS_005 | 1/B/113:114, 1/B/129:131 | Single bulged A IL_14190.2 | ||
| IL_1NBS_007 | 1/B/138:143, 1/B/165:171 | 7x6 Sarcin-Ricin; G-bulge IL_02666.1 | ||
| IL_1NBS_008 | 1/B/146:150, 1/B/159:162 | Receptor of 11-nt loop-receptor motif IL_87739.1 | ||
| IL_1NBS_009 | 1/B/181:182, 1/B/228:231 | Major groove intercalation IL_71421.2 | ||
| IL_1NBS_010 | 1/B/184:197, 1/B/216:226 | No text annotation IL_84409.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1NBS_004 | Isolated non-canonical cWW pair | ||
| IL_1NBS_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1NBS_001 | 1/A/133:135, 1/A/174:180, 1/A/232:233 | No text annotation | homologous J3_1NBS_002 J3_70464.1 | |
| J3_1NBS_002 | 1/B/133:135, 1/B/174:180, 1/B/232:233 | No text annotation J3_70464.1 | ||
| J4_1NBS_001 | 1/A/90:91, 1/A/112:113, 1/A/131:132, 1/A/234:235 | RNase P junction | homologous J4_1NBS_002 J4_86610.2 | |
| J4_1NBS_002 | 1/B/90:91, 1/B/112:113, 1/B/131:132, 1/B/234:235 | RNase P junction J4_86610.2 |
Problematic loops
No problematic loops
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