1ZBN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1ZBN_001 | 1/A/13:18 | No text annotation | ||
| HL_1ZBN_011 | 2/A/13:18 | No text annotation | ||
| HL_1ZBN_003 | 3/A/13:18 | No text annotation | ||
| HL_1ZBN_004 | 4/A/13:18 | No text annotation | ||
| HL_1ZBN_005 | 5/A/13:18 | No text annotation | ||
| HL_1ZBN_012 | 6/A/13:18 | No text annotation | ||
| HL_1ZBN_013 | 7/A/13:18 | No text annotation | ||
| HL_1ZBN_014 | 8/A/13:18 | No text annotation | ||
| HL_1ZBN_009 | 9/A/13:18 | No text annotation | ||
| HL_1ZBN_015 | 10/A/13:18 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1ZBN_002 | No text annotation | ||
| HL_1ZBN_006 | No text annotation | ||
| HL_1ZBN_007 | No text annotation | ||
| HL_1ZBN_008 | No text annotation | ||
| HL_1ZBN_010 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1ZBN_002 | 1/A/6:8, 1/A/22:23 | Multiple bulged bases | geometric IL_5W1H_001 IL_71421.4 | |
| IL_1ZBN_031 | 1/A/6:10, 1/A/21:23 | No text annotation | ||
| IL_1ZBN_003 | 1/A/8:10, 1/A/21:22 | Single bulged U | geometric IL_4V88_439 NA | |
| IL_1ZBN_005 | 2/A/6:8, 2/A/22:23 | Stack outside cWW | geometric IL_5WT1_001 IL_77710.2 | |
| IL_1ZBN_032 | 2/A/6:10, 2/A/21:23 | No text annotation | ||
| IL_1ZBN_006 | 2/A/8:10, 2/A/21:22 | No text annotation | geometric IL_8CRE_056 NA | |
| IL_1ZBN_008 | 3/A/6:8, 3/A/22:23 | Multiple bulged bases | geometric IL_5W1H_001 IL_71421.4 | |
| IL_1ZBN_033 | 3/A/6:10, 3/A/21:23 | No text annotation | ||
| IL_1ZBN_009 | 3/A/8:10, 3/A/21:22 | Single bulged U | geometric IL_6JDV_003 IL_97561.6 | |
| IL_1ZBN_011 | 4/A/6:8, 4/A/22:23 | Multiple bulged bases | geometric IL_5W1H_001 IL_71421.4 | |
| IL_1ZBN_034 | 4/A/6:10, 4/A/21:23 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_1ZBN_012 | 4/A/8:10, 4/A/21:22 | No text annotation | ||
| IL_1ZBN_014 | 5/A/6:8, 5/A/22:23 | No text annotation | ||
| IL_1ZBN_035 | 5/A/6:10, 5/A/21:23 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_1ZBN_015 | 5/A/8:10, 5/A/21:22 | No text annotation | ||
| IL_1ZBN_017 | 6/A/6:8, 6/A/22:23 | Multiple bulged bases | geometric IL_3R2D_001 IL_05670.1 | |
| IL_1ZBN_036 | 6/A/6:10, 6/A/21:23 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_1ZBN_018 | 6/A/8:10, 6/A/21:22 | No text annotation | ||
| IL_1ZBN_020 | 7/A/6:8, 7/A/22:23 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.4 | |
| IL_1ZBN_037 | 7/A/6:10, 7/A/21:23 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_1ZBN_021 | 7/A/8:10, 7/A/21:22 | No text annotation | geometric IL_9E5O_004 IL_97561.6 | |
| IL_1ZBN_023 | 8/A/6:8, 8/A/22:23 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.4 | |
| IL_1ZBN_038 | 8/A/6:10, 8/A/21:23 | No text annotation | ||
| IL_1ZBN_024 | 8/A/8:10, 8/A/21:22 | No text annotation | ||
| IL_1ZBN_026 | 9/A/6:8, 9/A/22:23 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.4 | |
| IL_1ZBN_039 | 9/A/6:10, 9/A/21:23 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_1ZBN_027 | 9/A/8:10, 9/A/21:22 | No text annotation | ||
| IL_1ZBN_029 | 10/A/6:8, 10/A/22:23 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.4 | |
| IL_1ZBN_040 | 10/A/6:10, 10/A/21:23 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_1ZBN_030 | 10/A/8:10, 10/A/21:22 | Single bulged U | geometric IL_6UFG_004 IL_97561.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1ZBN_001 | Isolated non-canonical cWW pair | ||
| IL_1ZBN_004 | Isolated non-canonical cWW pair | ||
| IL_1ZBN_007 | Isolated non-canonical cWW pair | ||
| IL_1ZBN_010 | Isolated non-canonical cWW pair | ||
| IL_1ZBN_013 | Isolated non-canonical cWW pair | ||
| IL_1ZBN_016 | Isolated non-canonical cWW pair | ||
| IL_1ZBN_019 | Isolated non-canonical cWW pair | ||
| IL_1ZBN_022 | Isolated non-canonical cWW pair | ||
| IL_1ZBN_025 | Other IL | ||
| IL_1ZBN_028 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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