3EPH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3EPH_001 | 1/E/13:22 | tRNA D-loop HL_45175.1 | ||
| HL_3EPH_002 | 1/E/31:39 | No text annotation HL_04783.2 | ||
| HL_3EPH_003 | 1/E/53:61 | T-loop with 2 stacked bulged bases HL_28252.8 | ||
| HL_3EPH_004 | 1/F/13:22 | tRNA D-loop | geometric HL_4V90_032 HL_20811.4 | |
| HL_3EPH_005 | 1/F/31:39 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3EPH_006 | 1/F/53:61 | T-loop with 2 stacked bulged bases | geometric HL_1N78_003 HL_28252.8 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3EPH_001 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3EPH_001 | 1/E/7:10, 1/E/25:27, 1/E/43:49, 1/E/65:66 | tRNA junction J4_70449.28 | ||
| J4_3EPH_002 | 1/F/5:10, 1/F/25:27, 1/F/43:49, 1/F/65:68 | No text annotation |
Problematic loops
No problematic loops
Coloring options: