3F2X Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3F2X_001 | 1/X/17:25 | T-loop with 2 bulged bases not stacked HL_01609.3 | ||
| HL_3F2X_002 | 1/X/36:43 | T-loop with unstacked turn HL_27670.2 | ||
| HL_3F2X_004 | 1/X/68:76 | T-loop with 2 bulged bases not stacked HL_01609.3 | ||
| HL_3F2X_005 | 1/X/88:95 | T-loop with unstacked turn HL_27670.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3F2X_003 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3F2X_001 | Isolated non-canonical cWW pair | ||
| IL_3F2X_002 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3F2X_001 | 1/X/8:15, 1/X/27:31, 1/X/84:86, 1/X/97:105 | FMN riboswitch J4_70672.1 | ||
| J4_3F2X_002 | 1/X/32:33, 1/X/46:49, 1/X/60:64, 1/X/80:83 | FMN riboswitch J4_36540.1 |
Problematic loops
No problematic loops
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