6JE9 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6JE9_001 | 1/B/42:47 | GNRA | geometric HL_4W90_003 HL_34789.5 | |
| HL_6JE9_002 | 1/B/74:79 | GNRA | geometric HL_5DCV_002 HL_34789.5 | |
| HL_6JE9_004 | 1/D/42:47 | GNRA | geometric HL_4W90_003 HL_34789.5 | |
| HL_6JE9_005 | 1/D/74:79 | GNRA | geometric HL_4RUM_002 HL_34789.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6JE9_003 | No text annotation | ||
| HL_6JE9_006 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6JE9_001 | 1/B/32:35, 1/B/54:57 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_71194.3 | |
| IL_6JE9_002 | 1/B/35:38, 1/B/51:54 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.3 | |
| IL_6JE9_003 | 1/B/69:70, 1/B/83:85 | Single bulged U | geometric IL_6JDV_003 IL_97561.6 | |
| IL_6JE9_004 | 1/B/93:97, 1/B/126:128 | C-loop | geometric IL_7RQB_104 NA | |
| IL_6JE9_005 | 1/D/32:35, 1/D/54:57 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_71194.3 | |
| IL_6JE9_006 | 1/D/35:38, 1/D/51:54 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.3 | |
| IL_6JE9_007 | 1/D/69:70, 1/D/83:85 | Single bulged U | geometric IL_6JDV_003 IL_97561.6 | |
| IL_6JE9_008 | 1/D/93:97, 1/D/126:128 | C-loop | geometric IL_7RQB_104 NA |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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