6UFG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6UFG_001 | 1/A/13:20 | Anticodon loop related HL_17440.1 | ||
| HL_6UFG_003 | 1/A/69:76 | Pseudoknot HL_17440.1 | ||
| HL_6UFG_004 | 1/A/105:110 | GNRA HL_34789.3 | ||
| HL_6UFG_005 | 1/A/144:149 | GNRA HL_34789.3 | ||
| HL_6UFG_006 | 1/B/13:23 | tRNA D-loop HL_88397.1 | ||
| HL_6UFG_007 | 1/B/32:40 | tRNA anticodon loop HL_81376.3 | ||
| HL_6UFG_008 | 1/B/54:62 | T-loop with 2 stacked bulged bases HL_33597.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6UFG_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6UFG_001 | 1/A/3:10, 1/A/23:27 | Kink-turn IL_71972.1 | ||
| IL_6UFG_002 | 1/A/34:41, 1/A/53:62 | 10x8 Sarcin-Ricin; G-bulge IL_22278.1 | ||
| IL_6UFG_003 | 1/A/96:99, 1/A/116:131 | No text annotation IL_57675.1 | ||
| IL_6UFG_004 | 1/A/138:140, 1/A/153:154 | Single bulged U IL_97561.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_6UFG_001 | 1/B/7:10, 1/B/26:28, 1/B/44:50, 1/B/66:67 | tRNA junction J4_95067.1 |
Problematic loops
No problematic loops
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