Motif IL_17283.1 Version IL_17283.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-6 | 4-7 | 4-9 | 6-7 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5AJ0 | 0.4770 | 2 | A2 | LSU rRNA | U | 2635 | G | 2636 | G | 2637 | A | 2638 | A | 2639 | G | 2641 | * | C | 2651 | G | 2652 | G | 2654 | A | 2655 | G | 2656 | A | 2657 | cWW | tSH | ncSS | tSS | ntHS | cWW | |||
| 2 | ➜ | 4V8P | 0.4034 | 2 | F1 | LSU rRNA | U | 1735 | G | 1736 | A | 1737 | A | 1738 | A | 1739 | U | 1741 | * | A | 1751 | G | 1752 | G | 1754 | A | 1755 | U | 1756 | A | 1757 | cWW | tSH | ntSH | tSS | tHS | cWW | |||
| 3 | ➜ | 4V88 | 0.1046 | 2 | A5 | LSU rRNA | C | 1711 | G | 1712 | G | 1713 | A | 1714 | A | 1715 | U | 1717 | * | G | 1727 | G | 1728 | G | 1730 | A | 1731 | U | 1732 | G | 1733 | cWW | tSH | ntSH | tSS | tHS | cWW | |||
| 4 | ➜ | 4V91 | 0.0000 | 2 | 1 | LSU rRNA | C | 1711 | G | 1712 | G | 1713 | A | 1714 | A | 1715 | U | 1717 | * | G | 1727 | G | 1728 | G | 1730 | A | 1731 | U | 1732 | G | 1733 | cWW | tSH | ntSH | tSS | tHS | cWW | |||
| 5 | ➜ | 3J79 | 0.1749 | 2 | A | LSU rRNA | U | 1868 | G | 1869 | G | 1870 | A | 1871 | A | 1872 | C | 1874 | * | G | 1884 | G | 1885 | G | 1887 | A | 1888 | A | 1889 | G | 1890 | cWW | tSH | tSH | tSS | tHS | cWW | |||
| 6 | ➜ | 4V9F | 0.6034 | 1 | Kink-turn | 0 | LSU rRNA | U | 1587 | G | 1588 | G | 1589 | A | 1590 | A | 1591 | G | 1592 | * | C | 1602 | A | 1603 | G | 1605 | A | 1606 | A | 1607 | G | 1608 | cWW | tSH | tSH | tSS | tHS | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAUU*GGAGAUG | 2 |
| UGGAAG*CAGGAAG | 1 |
| UGGAAUC*GGAGAAG | 1 |
| UGGAAUG*CGAGAGA | 1 |
| UGAAAUU*AGAGAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAU*GAGAU | 2 |
| GGAA*AGGAA | 1 |
| GGAAU*GAGAA | 1 |
| GGAAU*GAGAG | 1 |
| GAAAU*GAGAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (1)
- Basepair signature
- cWW-tSH-tSH-tHS-tSS-L-R-cWW
- Heat map statistics
- Min 0.10 | Avg 0.37 | Max 0.65
Coloring options: