1YNG Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1YNG_001 | 1/A/11:20 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_1YNG_002 | 2/A/11:20 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_1YNG_003 | 3/A/11:20 | No text annotation Not in a motif group | ||
| HL_1YNG_004 | 4/A/11:20 | No text annotation Not in a motif group | ||
| HL_1YNG_005 | 5/A/11:20 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_1YNG_006 | 6/A/11:20 | No text annotation Not in a motif group | geometric HL_3SKL_006 HL_47100.1 | |
| HL_1YNG_007 | 7/A/11:20 | No text annotation Not in a motif group | geometric HL_3SKL_006 HL_47100.1 | |
| HL_1YNG_008 | 8/A/11:20 | No text annotation Not in a motif group | geometric HL_3SKL_006 HL_47100.1 | |
| HL_1YNG_009 | 9/A/11:20 | No text annotation Not in a motif group | geometric HL_2AZX_004 HL_25462.2 | |
| HL_1YNG_010 | 10/A/11:20 | No text annotation Not in a motif group | geometric HL_3SKL_006 HL_47100.1 | |
| HL_1YNG_011 | 11/A/11:20 | No text annotation Not in a motif group | ||
| HL_1YNG_012 | 12/A/11:20 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_1YNG_013 | 13/A/11:20 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_1YNG_014 | 14/A/11:20 | No text annotation Not in a motif group | ||
| HL_1YNG_015 | 15/A/11:20 | No text annotation Not in a motif group | geometric HL_5B63_003 HL_25462.2 | |
| HL_1YNG_016 | 16/A/11:20 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1YNG_001 | 1/A/6:8, 1/A/23:26 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1YNG_002 | 2/A/6:8, 2/A/23:26 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1YNG_003 | 3/A/6:8, 3/A/23:26 | Major groove platform with extra cWW Not in a motif group | geometric IL_3PDR_004 IL_18471.2 | |
| IL_1YNG_004 | 4/A/6:8, 4/A/23:26 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1YNG_005 | 5/A/6:8, 5/A/23:26 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_1YNG_006 | 6/A/6:8, 6/A/23:26 | Major groove platform with extra cWW Not in a motif group | geometric IL_3PDR_004 IL_18471.2 | |
| IL_1YNG_007 | 7/A/6:8, 7/A/23:26 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_1YNG_008 | 8/A/6:8, 8/A/23:26 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_1YNG_009 | 9/A/6:8, 9/A/23:26 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_1YNG_010 | 10/A/6:8, 10/A/23:26 | No text annotation Not in a motif group | geometric IL_4V88_457 IL_95997.1 | |
| IL_1YNG_011 | 11/A/6:8, 11/A/23:26 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_1YNG_012 | 12/A/6:8, 12/A/23:26 | No text annotation Not in a motif group | ||
| IL_1YNG_013 | 13/A/6:8, 13/A/23:26 | No text annotation Not in a motif group | ||
| IL_1YNG_014 | 14/A/7:8, 14/A/23:25 | No text annotation Not in a motif group | ||
| IL_1YNG_015 | 15/A/6:8, 15/A/23:26 | No text annotation Not in a motif group | ||
| IL_1YNG_016 | 16/A/6:8, 16/A/23:26 | Multiple bulged bases, near cWW Not in a motif group | geometric IL_5M0H_002 IL_51629.2 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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